Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
YPO1950Putative peptidase; Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC60 (EMBL:AL031866) (405 aa) fasta scores: E(): 0, 99.8% id in 405 aa. Similar to Lactococcus lactis aminopeptidase P PepP TR:O08316 (EMBL:Y08842) (352 aa) fasta scores: E(): 4.3e-14, 25.9% id in 390 aa. Similar to YPO3004 (71.6% identity in 331 aa overlap). (405 aa)    
Predicted Functional Partners:
nifJ
Similar to Escherichia coli probable pyruvate-flavodoxin oxidoreductase YdbK SW:NIFJ_ECOLI (P52647) (1174 aa) fasta scores: E(): 0, 80.5% id in 1177 aa, and to Klebsiella pneumoniae pyruvate-flavodoxin oxidoreductase NifJ SW:NIFJ_KLEPN (P03833) (1171 aa) fasta scores: E(): 0, 48.0% id in 1184 aa.
     
 0.522
tehB
Previously sequenced as Yersinia pestis probable tellurite resistance protein TehB TR:Q9ZC59 (EMBL:AL031866) (295 aa) fasta scores: E(): 0, 100.0% id in 295 aa. Similar to Streptococcus pneumoniae tellurite resistance protein TehB TR:Q9X3Q7 (EMBL:AF079807) (286 aa) fasta scores: E(): 0, 56.2% id in 283 aa.
    
  0.505
YPO3261
Probable amidase; Similar to Mycobacterium smegmatis nicotinamidase/pyrazinamidase PzaA TR:Q9ZHK8 (EMBL:AF058285) (468 aa) fasta scores: E(): 0, 34.4% id in 453 aa, and to Rhodococcus sp. enantiomerase-selective amidase AmdA TR:Q53116 (EMBL:M74531) (462 aa) fasta scores: E(): 0, 33.8% id in 461 aa.
    
   0.491
solA
Putative sarcosine oxidase; Catalyzes the oxidative demethylation of N-methyl-L- tryptophan; Belongs to the MSOX/MTOX family. MTOX subfamily.
 
 
  0.485
pepD
Similar to Escherichia coli aminoacyl-histidine dipeptidase PepD or PepH SW:PEPD_ECOLI (P15288) (484 aa) fasta scores: E(): 0, 78.3% id in 484 aa, and to Haemophilus influenzae aminoacyl-histidine dipeptidase PepD or HI0675 SW:PEPD_HAEIN (P44817) (483 aa) fasta scores: E(): 0, 53.6% id in 485 aa.
   
 
 0.476
b0026
isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.
 
 
 0.474
trpC
Tryptophan biosynthesis protein TrpCF; Bifunctional enzyme that catalyzes two sequential steps of tryptophan biosynthetic pathway. The first reaction is catalyzed by the isomerase, coded by the TrpF domain; the second reaction is catalyzed by the synthase, coded by the TrpC domain (By similarity).
  
  
 0.456
pepN
Similar to Escherichia coli aminopeptidase N PepN SW:AMPN_ECOLI (P04825) (869 aa) fasta scores: E(): 0, 77.2% id in 869 aa, and to Vibrio cholerae aminopeptidase N VC1494 TR:Q9KRY9 (EMBL:AE004227) (868 aa) fasta scores: E(): 0, 65.1% id in 871 aa.
  
 
 0.449
hisS
Similar to Escherichia coli histidyl-tRNA synthetase HisS SW:SYH_ECOLI (P04804) (423 aa) fasta scores: E(): 0,82.0% id in 423 aa, and to Salmonella typhimurium histidyl-tRNA synthetase HisS SW:SYH_SALTY (O52765) (423 aa) fasta scores: E(): 0, 82.0% id in 423 aa.
 
  
 0.435
irp1
Previously sequenced as Yersinia pestis yersiniabactin biosynthetic protein Irp1 TR:Q9Z373 (EMBL:AL031866) (3163 aa) fasta scores: E(): 0, 100.0% id in 3163 aa. Similar to Yersinia enterocolitica HMWP1 protein Irp1 TR:O54511 (EMBL:Y12527) (3161 aa) fasta scores: E(): 0, 97.9% id in 3163 aa.
  
 0.424
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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