STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO1997Putative exported protein; No significant database matches. (357 aa)    
Predicted Functional Partners:
irp1
Previously sequenced as Yersinia pestis yersiniabactin biosynthetic protein Irp1 TR:Q9Z373 (EMBL:AL031866) (3163 aa) fasta scores: E(): 0, 100.0% id in 3163 aa. Similar to Yersinia enterocolitica HMWP1 protein Irp1 TR:O54511 (EMBL:Y12527) (3161 aa) fasta scores: E(): 0, 97.9% id in 3163 aa.
  
 0.961
YPO2002
Similar to Escherichia coli hypothetical protein YcjY SW:YCJY_ECOLI (P76049) (310 aa) fasta scores: E(): 0,36.6% id in 295 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2218 pa2218 TR:AAG05606 (EMBL:Z14064) (367 aa) fasta scores: E(): 2e-29, 33.8% id in 349 aa. Contains a 2x repeat unit: TSVFK.
 
 
 0.866
YPO1998
Putative exported protein; Similar to Escherichia coli Pep1 TnpA TR:P75026 (EMBL:U60777) (140 aa) fasta scores: E(): 0.13, 31.4% id in 137 aa, and to Thermotoga maritima hypothetical 15.1 kDa protein Tm1010 TR:Q9X0A3 (EMBL:AE001762) (135 aa) fasta scores: E(): 1.2e-12, 42.0% id in 119 aa.
 
 
 0.823
nifJ
Similar to Escherichia coli probable pyruvate-flavodoxin oxidoreductase YdbK SW:NIFJ_ECOLI (P52647) (1174 aa) fasta scores: E(): 0, 80.5% id in 1177 aa, and to Klebsiella pneumoniae pyruvate-flavodoxin oxidoreductase NifJ SW:NIFJ_KLEPN (P03833) (1171 aa) fasta scores: E(): 0, 48.0% id in 1184 aa.
  
 
 0.822
poaA
Bifunctional PutA protein [includes: proline dehydrogenase and delta-1-pyrroline-5-carboxylate; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
     
 0.739
apaH
Bis(5'nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
  0.723
YPO2003
Putative exported protein; No significant database matches.
 
     0.670
aas
Aas bifunctional protein; Plays a role in lysophospholipid acylation. Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3- phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1.
  
 0.634
YPO2806
Similar to Thermotoga maritima aldo/keto reductase family oxidoreductase TM1006 TR:Q9X0A1 (EMBL:AE001762) (333 aa) fasta scores: E(): 0, 62.0% id in 326 aa, and to Helicobacter pylori putative aldo-keto reductase HP1193 TR:O25804 (EMBL:AE000625) (329 aa) fasta scores: E(): 0,51.5% id in 332 aa.
 
 
   0.585
aidB
Putative acyl-CoA dehydrogenase; Similar to Escherichia coli probable CoA dehydrogenase protein AidB SW:AIDB_ECOLI (P33224) (546 aa) fasta scores: E(): 0, 69.5% id in 541 aa, and to Pseudomonas aeruginosa probable acyl-CoA dehydrogenase PA3972 TR:AAG07359 (EMBL:AE004815) (549 aa) fasta scores: E(): 0, 44.8% id in 542 aa. Possible alternative translational start site.
   
 0.571
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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