STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO1998Putative exported protein; Similar to Escherichia coli Pep1 TnpA TR:P75026 (EMBL:U60777) (140 aa) fasta scores: E(): 0.13, 31.4% id in 137 aa, and to Thermotoga maritima hypothetical 15.1 kDa protein Tm1010 TR:Q9X0A3 (EMBL:AE001762) (135 aa) fasta scores: E(): 1.2e-12, 42.0% id in 119 aa. (156 aa)    
Predicted Functional Partners:
YPO1999
Putative decarboxylase; Similar to Acinetobacter calcoaceticus 4-carboxymuconolactone decarboxylase PcaC SW:DC4C_ACICA (P20370) (134 aa) fasta scores: E(): 1.4e-09, 35.9% id in 103 aa, and to Methanobacterium thermoautotrophicum gamma-carboxymuconolactone decarboxylase Mth234 TR:O26336 (EMBL:AE000810) (125 aa) fasta scores: E(): 4.7e-11, 35.5% id in 107 aa.
  
 0.989
YPO1997
Putative exported protein; No significant database matches.
 
 
 0.823
YPO2002
Similar to Escherichia coli hypothetical protein YcjY SW:YCJY_ECOLI (P76049) (310 aa) fasta scores: E(): 0,36.6% id in 295 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2218 pa2218 TR:AAG05606 (EMBL:Z14064) (367 aa) fasta scores: E(): 2e-29, 33.8% id in 349 aa. Contains a 2x repeat unit: TSVFK.
 
    0.809
YPO2003
Putative exported protein; No significant database matches.
 
     0.756
ptxR
Putative LysR-family transcriptional regulatory protein; Similar to Pseudomonas aeruginosa exotoxin A positive transcriptional regulator PtxR TR:AAG05646 (EMBL:U35068) (312 aa) fasta scores: E(): 4.1e-22, 31.6% id in 294 aa, and to Xylella fastidiosa transcriptional regulator XF1752 TR:Q9PCM6 (EMBL:AE003998) (324 aa) fasta scores: E(): 0, 52.9% id in 297 aa; Belongs to the LysR transcriptional regulatory family.
  
    0.579
cobB
Putative Sir2 family protein; NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form.
  
    0.569
YPO1890
GntR-family putative transcriptional regulatory protein; Similar to Deinococcus radiodurans GntR-family transcriptional regulator DRA0211 TR:Q9RYU6 (EMBL:AE001863) (279 aa) fasta scores: E(): 8.7e-28, 40.1% id in 232 aa,and to Escherichia coli hypothetical transcriptional regulator YegW SW:YEGW_ECOLI (P76420) (248 aa) fasta scores: E(): 9.4e-18, 29.2% id in 226 aa.
  
    0.565
hutC
Putative GntR-family transcriptional regulatory protein; Previously sequenced as Yersinia pestis hypothetical protein HutC TR:Q9ZC75 (EMBL:AL031866) (255 aa) fasta scores: E(): 0, 99.6% id in 255 aa. Similar to Pseudomonas putida histidine utilization repressor HutC SW:HUTC_PSEPU (P22773) (248 aa) fasta scores: E(): 0, 63.2% id in 242 aa.
  
    0.565
phnF
Probable gntR-family transcriptional regulatory protein; Similar to Escherichia coli PhnF protein SW:PHNF_ECOLI (P16684) (241 aa) fasta scores: E(): 0, 73.4% id in 241 aa, and to Pseudomonas aeruginosa probable transcriptional regulator PA3381 TR:AAG06769 (EMBL:AE004759) (240 aa) fasta scores: E(): 9e-26, 43.3% id in 233 aa.
  
    0.565
irp1
Previously sequenced as Yersinia pestis yersiniabactin biosynthetic protein Irp1 TR:Q9Z373 (EMBL:AL031866) (3163 aa) fasta scores: E(): 0, 100.0% id in 3163 aa. Similar to Yersinia enterocolitica HMWP1 protein Irp1 TR:O54511 (EMBL:Y12527) (3161 aa) fasta scores: E(): 0, 97.9% id in 3163 aa.
     
 0.518
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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