STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO2002Similar to Escherichia coli hypothetical protein YcjY SW:YCJY_ECOLI (P76049) (310 aa) fasta scores: E(): 0,36.6% id in 295 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2218 pa2218 TR:AAG05606 (EMBL:Z14064) (367 aa) fasta scores: E(): 2e-29, 33.8% id in 349 aa. Contains a 2x repeat unit: TSVFK. (363 aa)    
Predicted Functional Partners:
wbyK
Similar to Yersinia enterocolitica probable GDP-mannose 4,6-dehydratase Gmd SW:GM4D_YEREN (Q56872) (372 aa) fasta scores: E(): 0, 88.9% id in 371 aa, and to Yersinia pseudotuberculosis GDP-mannose-4,6-dehydratase Gmd TR:Q9RCB3 (EMBL:AJ251712) (373 aa) fasta scores: E(): 0,99.7% id in 373 aa. There is a frameshift following codon 156. The sequence has been checked and is believed to be correct.
   
 
 0.876
wbyJ
Putative O-unit polymerase protein (pseudogene); PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
   
 
 0.876
YPO1997
Putative exported protein; No significant database matches.
 
 
 0.863
YPO2003
Putative exported protein; No significant database matches.
 
    0.856
YPO1998
Putative exported protein; Similar to Escherichia coli Pep1 TnpA TR:P75026 (EMBL:U60777) (140 aa) fasta scores: E(): 0.13, 31.4% id in 137 aa, and to Thermotoga maritima hypothetical 15.1 kDa protein Tm1010 TR:Q9X0A3 (EMBL:AE001762) (135 aa) fasta scores: E(): 1.2e-12, 42.0% id in 119 aa.
 
    0.809
fpk
1-phosphofructokinase; Similar to Escherichia coli 1-phosphofructokinase FruK or Fpk SW:K1PF_ECOLI (P23539) (312 aa) fasta scores: E(): 0, 92.0% id in 312 aa, and to Haemophilus influenzae 1-phosphofructokinase FruK SW:K1PF_HAEIN (P44330) (313 aa) fasta scores: E(): 0, 55.4% id in 305 aa; Belongs to the carbohydrate kinase PfkB family.
   
    0.735
YPO2004
Putative membrane protein; No significant database matches.
 
    0.693
YPO2806
Similar to Thermotoga maritima aldo/keto reductase family oxidoreductase TM1006 TR:Q9X0A1 (EMBL:AE001762) (333 aa) fasta scores: E(): 0, 62.0% id in 326 aa, and to Helicobacter pylori putative aldo-keto reductase HP1193 TR:O25804 (EMBL:AE000625) (329 aa) fasta scores: E(): 0,51.5% id in 332 aa.
 
     0.567
irp1
Previously sequenced as Yersinia pestis yersiniabactin biosynthetic protein Irp1 TR:Q9Z373 (EMBL:AL031866) (3163 aa) fasta scores: E(): 0, 100.0% id in 3163 aa. Similar to Yersinia enterocolitica HMWP1 protein Irp1 TR:O54511 (EMBL:Y12527) (3161 aa) fasta scores: E(): 0, 97.9% id in 3163 aa.
 
 
 0.548
YPO1999
Putative decarboxylase; Similar to Acinetobacter calcoaceticus 4-carboxymuconolactone decarboxylase PcaC SW:DC4C_ACICA (P20370) (134 aa) fasta scores: E(): 1.4e-09, 35.9% id in 103 aa, and to Methanobacterium thermoautotrophicum gamma-carboxymuconolactone decarboxylase Mth234 TR:O26336 (EMBL:AE000810) (125 aa) fasta scores: E(): 4.7e-11, 35.5% id in 107 aa.
 
    0.538
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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