STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO2004Putative membrane protein; No significant database matches. (231 aa)    
Predicted Functional Partners:
YPO2003
Putative exported protein; No significant database matches.
    0.940
YPO2002
Similar to Escherichia coli hypothetical protein YcjY SW:YCJY_ECOLI (P76049) (310 aa) fasta scores: E(): 0,36.6% id in 295 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2218 pa2218 TR:AAG05606 (EMBL:Z14064) (367 aa) fasta scores: E(): 2e-29, 33.8% id in 349 aa. Contains a 2x repeat unit: TSVFK.
 
    0.693
YPO1997
Putative exported protein; No significant database matches.
 
     0.506
YPO2805
Putative aldo/keto reductase; Similar to Corynebacterium sp 2,5-diketo-D-gluconic acid reductase TR:P06632 (EMBL:M12799) (278 aa) fasta scores: E(): 0, 45.0% id in 262 aa, and to Thermotoga maritima aldo/keto reductase family oxidoreductase TM1009 TR:Q9X0A2 (EMBL:AE001762) (286 aa) fasta scores: E(): 0,60.1% id in 283 aa.
  
     0.501
YPO1998
Putative exported protein; Similar to Escherichia coli Pep1 TnpA TR:P75026 (EMBL:U60777) (140 aa) fasta scores: E(): 0.13, 31.4% id in 137 aa, and to Thermotoga maritima hypothetical 15.1 kDa protein Tm1010 TR:Q9X0A3 (EMBL:AE001762) (135 aa) fasta scores: E(): 1.2e-12, 42.0% id in 119 aa.
 
     0.500
YPO1999
Putative decarboxylase; Similar to Acinetobacter calcoaceticus 4-carboxymuconolactone decarboxylase PcaC SW:DC4C_ACICA (P20370) (134 aa) fasta scores: E(): 1.4e-09, 35.9% id in 103 aa, and to Methanobacterium thermoautotrophicum gamma-carboxymuconolactone decarboxylase Mth234 TR:O26336 (EMBL:AE000810) (125 aa) fasta scores: E(): 4.7e-11, 35.5% id in 107 aa.
 
     0.467
YPO0986
Putative exported protein; No significant database matches to the full length CDS. Similar to Thermotoga maritima hypothetical protein TM0033 TR:Q9WXP0 (EMBL:AE001691) (395 aa) fasta scores: E(): 7.1e-13, 27.9% id in 427 aa. CDS contains an imperfect amino acid repeat (KDYSPD x3) residues 207 to 224.
  
     0.442
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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