STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO2005Putative exported protein; No significant database matches. (280 aa)    
Predicted Functional Partners:
fla
Similar to Escherichia coli flagellar motor switch protein FliG SW:FLIG_ECOLI (P31067) (331 aa) fasta scores: E(): 2.7e-20, 31.1% id in 318 aa, and to Salmonella typhimurium flagellar motor switch protein FliG SW:FLIG_SALTY (P15933) (331 aa) fasta scores: E(): 3.5e-21,31.4% id in 318 aa.
   
   0.623
YPO0744
Putative flagellar biogenesis protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.620
cheC1
Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.620
fla-12
Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
    
   0.620
YPO0514
Putative OmpA-family membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein PA0078 TR:AAG03468 (EMBL:AE004447) (449 aa) fasta scores: E(): 4.5e-09, 28.2% id in 457 aa.
   
   0.547
YPO2723
Putative OmpA family protein; Poor database matches, similar to Pseudomonas aeruginosa hypothetical protein PA0078 TR:AAG03468 (EMBL:AE004447) (449 aa) fasta scores: E(): 3.7e-25, 35.1% id in 265 aa. This CDS may have been disrupted by the insertion of the upstream IS100 element; was marked partial.
   
   0.547
lafU
Similar to Escherichia coli chemotaxis protein MotB protein SW:MOTB_ECOLI (P09349) (308 aa) fasta scores: E(): 1.1e-23, 32.6% id in 310 aa, and to Vibrio parahaemolyticus chemotaxis protein LafU SW:LAFU_VIBPA (Q03478) (330 aa) fasta scores: E(): 0, 40.1% id in 297 aa.
   
   0.542
motB
Similar to Escherichia coli chemotaxis MotB protein SW:MOTB_ECOLI (P09349) (308 aa) fasta scores: E(): 0, 68.8% id in 311 aa, and to Salmonella typhimurium chemotaxis MotB protein SW:MOTB_SALTY (P55892) (309 aa) fasta scores: E(): 0, 67.9% id in 312 aa. Note that this CDS is 119 aa longer,at the C-terminal end, than the MotB protein.
    
   0.538
YPO0618
Putative membrane protein; Similar to Escherichia coli hypothetical transporter YjcQ SW:YJCQ_ECOLI (P32715) (683 aa) fasta scores: E(): 5.5e-22, 26.9% id in 572 aa, and to Streptomyces coelicolor putative integral membrane protein SC9A4.21 TR:CAC01648 (EMBL:AL391072) (645 aa) fasta scores: E(): 0.1, 24.7% id in 461 aa.
  
     0.456
nfi
Endonuclease V; DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA.
  
    0.443
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.