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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO2012Putative membrane protein; Similar to Escherichia coli hypothetical protein YchH SW:YCHH_ECOLI (P31807) (92 aa) fasta scores: E(): 6.4e-26, 68.5% id in 92 aa. (90 aa)    
Predicted Functional Partners:
cspD
Similar to Escherichia coli cold shock-like protein CspD SW:CSPD_ECOLI (P24245) (74 aa) fasta scores: E(): 3e-25, 87.3% id in 71 aa, and to Vibrio cholerae cold shock-like protein CspD TR:Q9KSW4 (EMBL:AE004194) (76 aa) fasta scores: E(): 1.1e-20, 77.5% id in 71 aa.
   
    0.801
YPO1864
Similar to Escherichia coli hypothetical protein YecF SW:YECF_ECOLI (P46120) (74 aa) fasta scores: E(): 1.4e-16, 60.8% id in 74 aa.
  
     0.767
YPO0569
Similar to Escherichia coli hypothetical protein YqjK SW:YQJK_ECOLI (Q47710) (99 aa) fasta scores: E(): 1.6e-13, 42.7% id in 82 aa.
  
    0.757
ail-2
Similar to Yersinia enterocolitica attachment invasion locus protein precursor Ail SW:AIL_YEREN (P16454) (178 aa) fasta scores: E(): 2.6e-29, 46.1% id in 178 aa,and to Yersinia pseudotuberculosis attachment invasion locus protein precursor Ail SW:AIL_YERPS (Q56957) (182 aa) fasta scores: E(): 2.9e-28, 45.1% id in 173 aa.
  
    0.756
YPO2305
Putative exported protein; Similar to Escherichia coli hypothetical protein YdgH SW:YDGH_ECOLI (P76177) (314 aa) fasta scores: E(): 0,70.0% id in 317 aa, and to Borrelia hermsii outer membrane lipoprotein 10 Vmp10 TR:P70900 (EMBL:U52037) (366 aa) fasta scores: E(): 1.3, 23.6% id in 292 aa.
  
     0.755
YPO0569a
Similar to Escherichia coli hypothetical protein YqjE SW:YQJE_ECOLI (P42618) (134 aa) fasta scores: E(): 6.7e-29, 62.3% id in 130 aa, and to Sesamum indicum hypothetical oleosin protein TR:O04925 (EMBL:U97700) (144 aa) fasta scores: E(): 6.7, 29.4% id in 136 aa.
  
    0.754
yhhK
Putative acetyltransferase; Controls both the activation and catalytic activity of PanD in a coenzyme A (CoA)-dependent fashion; Belongs to the PanZ/PanM family.
  
    0.752
ail-3
Similar to Yersinia pseudotuberculosis attachment invasion locus protein Ail SW:AIL_YERPS (Q56957) (182 aa) fasta scores: E(): 0, 98.4% id in 182 aa, and to Yersinia enterocolitica attachment invasion locus protein precursor Ail SW:AIL_YEREN (P16454) (178 aa) fasta scores: E(): 0,74.3% id in 179 aa, and to Serratia marcescens outer membrane protein precursor Omp4 TR:Q54470 (EMBL:Z37157) (172 aa) fasta scores: E(): 3.3e-23, 43.7% id in 183 aa.
  
    0.749
YPO1269
Similar to Escherichia coli hypothetical protein YejG SW:YEJG_ECOLI (P33917) (114 aa) fasta scores: E(): 5.8e-24, 54.4% id in 114 aa.
  
     0.748
YPO1119
Conserved hypothetical protein; Similar to Escherichia coli protein YbgE SW:YBGE_ECOLI (P37343) (97 aa) fasta scores: E(): 6e-22,59.6% id in 89 aa, and to Vibrio cholerae hypothetical protein VC1841 TR:Q9KR06 (EMBL:AE004260) (105 aa) fasta scores: E(): 4.3e-08, 34.5% id in 84 aa.
  
    0.745
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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