STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO2129Similar to bacteriophage lambda tail assembly protein I I SW:VTAI_LAMBD (P03730) (223 aa) fasta scores: E(): 2.4e-13, 35.7% id in 210 aa, and to Yersinia pestis pMT1 plasmid hypothetical protein YPMT1.07C TR:O68725 (EMBL:AF074611) (195 aa) fasta scores: E(): 9e-07, 32.1% id in 209 aa. (206 aa)    
Predicted Functional Partners:
YPO2122
Similar to bacteriophage N15 protein gp18 TR:O64332 (EMBL:AF064539) (251 aa) fasta scores: E(): 0, 66.4% id in 250 aa, and to bacteriophage HK022 protein gp18 TR:Q9MCU4 (EMBL:AF069308) (251 aa) fasta scores: E(): 0, 67.6% id in 250 aa.
 
  
 0.972
YPO2120
Similar to bacteriophage HK022 protein gp17 TR:Q9MCU5 (EMBL:AF069308) (112 aa) fasta scores: E(): 3.4e-17, 45.6% id in 114 aa, and to bacteriophage N15 protein gp17 TR:O64331 (EMBL:AF064539) (115 aa) fasta scores: E(): 6.9e-17, 46.6% id in 116 aa.
 
    0.966
YPO2131
Similar to bacteriophage lambda host specificity protein J SW:VHSJ_LAMBD (P03749) (1132 aa) fasta scores: E(): 0, 29.5% id in 1056 aa, and to bacteriophage N15 protein gp21 TR:O64335 (EMBL:AF064539) (1061 aa) fasta scores: E(): 0, 58.7% id in 1041 aa.
 
    0.966
YPO2123
Putative phage minor tail protein; Similar to bacteriophage N15 protein gp19 TR:O64333 (EMBL:AF064539) (243 aa) fasta scores: E(): 0, 76.4% id in 233 aa, and to bacteriophage HK022 protein gp19 TR:Q9MCU3 (EMBL:AF069308) (236 aa) fasta scores: E(): 0, 76.0% id in 233 aa.
 
    0.965
YPO2119
Putative phage tail protein; C-terminal region is similar to bacteriophage lambda minor tail protein precursor H SW:VMTH_LAMBD (P03736) (853 aa) fasta scores: E(): 0, 28.1% id in 915 aa, and to bacteriophage N15 protein gp16 TR:O64330 (EMBL:AF064539) (838 aa) fasta scores: E(): 1.5e-23, 29.4% id in 889 aa.
 
    0.960
YPO1489
Hypothetical protein; Poor database hits, weakly similar to Vibrio cholerae hypothetical protein VCA0121 TR:Q9KN44 (EMBL:AE004353) (421 aa) fasta scores: E(): 2e-06, 22.5% id in 445 aa.
  
    0.667
YPO0966
Putative kinase; No significant database matches to the full length CDS. Some similarity to internal region of Staphylococcus carnosus hydroxyethylthiazole kinase ThiM SW:THIM_STACA (Q9RGS6) (264 aa) fasta scores: E(): 8.5, 30.2% id in 106 aa. CDS is similar to YPO1473 (83.2% identity in 768 aa overlap).
  
    0.664
YPO0969
Hypothetical protein; No significant database hits.
  
    0.661
YPO1473
Hypothetical protein; No significant database hits. Similar to YPO0966 (83.2% identity in 768 aa overlap) and YPO1476 (51.9% identity in 567 aa overlap).
  
    0.661
YPO2116
Putative phage protein; C-terminal region of the CDS is similar to the C-terminus of bacteriophage N15 protein gp13 TR:O64327 (EMBL:AF064539) (245 aa) fasta scores: E(): 1.6e-07, 50.0% id in 92 aa, and to Yersinia pestis hypothetical protein YPMT1.14C TR:O68731 (EMBL:AF053947) (248 aa) fasta scores: E(): 4.7e-06, 30.2% id in 192 aa.
 
    0.647
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.