Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
y1062-11Transposase for the IS285 insertion element; Previously sequenced Yersinia pestis transposase Y1062 or Ypmt1.80C TR:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 0, 100.0% id in 402 aa. (402 aa)    
Predicted Functional Partners:
YPO0284
Conserved hypothetical protein; Previously sequenced as Yersinia pestis hypothetical 23.2 kDa protein TR:Q56987 (EMBL:U60647) (216 aa) fasta scores: E(): 0, 100.0% id in 216 aa. Also similar to Shigella dysenteriae hypothetical 21.8 kDa protein ShuY TR:O70016 (EMBL:U64516) (207 aa) fasta scores: E(): 0,55.9% id in 211 aa.
      
 0.482
YPO0988
Putative membrane protein; Similar to Shigella flexneri SHI-2 pathogenicity island protein ShiF TR:Q9XCH6 (EMBL:AF141323) (397 aa) fasta scores: E(): 0, 58.5% id in 381 aa, and to Deinococcus radiodurans possible drug transport protein DR2169 TR:Q9RSF5 (EMBL:AE002050) (441 aa) fasta scores: E(): 2.7e-11, 25.4% id in 409 aa.
      
 0.482
YPO1003
Putative exported protein; No significant database matches.
      
 0.482
YPO1735
Putative ABC transporter (ATP-binding protein); Similar to Bacillus halodurans ABC transporter Bh3891 TR:Q9K641 (EMBL:AP001520) (577 aa) fasta scores: E(): 0, 62.2% id in 569 aa, and to Bacillus subtilis hypothetical ABC transporter ATP-binding protein in acda 5'region YwjA SW:YWJA_BACSU (P45861) (575 aa) fasta scores: E(): 0, 59.4% id in 569 aa.
      
 0.482
YPO3339
Hypothetical protein; Weakly similar to Escherichia coli ankyrin-repeat protein A ArpA or Arp SW:ARPA_ECOLI (P23325) (728 aa) fasta scores: E(): 5.3e-10, 24.9% id in 369 aa, and to Shigella flexneri enterotoxin SenA TR:Q47635 (EMBL:Z54211) (565 aa) fasta scores: E(): 1.6e-09, 27.2% id in 357 aa.
      
 0.482
yhhN
Putative membrane protein; Similar to Escherichia coli hypothetical protein YhhN SW:YHHN_ECOLI (P37616) (208 aa) fasta scores: E(): 0,66.8% id in 208 aa, and to Vibrio cholerae hypothetical protein VCA0703 TR:Q9KLP0 (EMBL:AE004400) (229 aa) fasta scores: E(): 2.1e-13, 29.9% id in 187 aa.
      
 0.482
YPO2137
Similar to Staphylococcus aureus hypothetical protein SA2250 TR:Q9ZGN7 (EMBL:AF076683) (397 aa) fasta scores: E(): 4.5e-08, 21.6% id in 399 aa, and to Escherichia coli hypothetical protein YhhS SW:YHHS_ECOLI (P37621) (419 aa) fasta scores: E(): 8.4e-08, 22.8% id in 400 aa.
       0.405
YPO2138
Putative aminotransferase; Similar to Mus musculus cysteine desulfurase,mitochondrial precursor NifS TR:Q9Z1J3 (EMBL:AJ222660) (459 aa) fasta scores: E(): 0, 48.4% id in 384 aa, and to Schizosaccharomyces pombe probable cysteine desulfurase,mitochondrial precursor SPBC21d10.11C TR:O74351 (EMBL:AL031536) (498 aa) fasta scores: E(): 0, 48.4% id in 384 aa. CDS is similar to YPO2896 (409 aa) fasta scores: E(): 0, 51.3% identity in 386 aa overlap.
       0.405
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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