STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO2139Hypothetical phage protein; No significant database matches. (246 aa)    
Predicted Functional Partners:
YPO2137
Similar to Staphylococcus aureus hypothetical protein SA2250 TR:Q9ZGN7 (EMBL:AF076683) (397 aa) fasta scores: E(): 4.5e-08, 21.6% id in 399 aa, and to Escherichia coli hypothetical protein YhhS SW:YHHS_ECOLI (P37621) (419 aa) fasta scores: E(): 8.4e-08, 22.8% id in 400 aa.
       0.737
YPO2138
Putative aminotransferase; Similar to Mus musculus cysteine desulfurase,mitochondrial precursor NifS TR:Q9Z1J3 (EMBL:AJ222660) (459 aa) fasta scores: E(): 0, 48.4% id in 384 aa, and to Schizosaccharomyces pombe probable cysteine desulfurase,mitochondrial precursor SPBC21d10.11C TR:O74351 (EMBL:AL031536) (498 aa) fasta scores: E(): 0, 48.4% id in 384 aa. CDS is similar to YPO2896 (409 aa) fasta scores: E(): 0, 51.3% identity in 386 aa overlap.
       0.737
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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