Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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Textmining
[Homology]
Score
YPO2145Similar to Escherichia coli hypothetical protein YcgB SW:YCGB_ECOLI (P29013) (510 aa) fasta scores: E(): 0,84.6% id in 508 aa, and to Vibrio cholerae hypothetical protein VC1874 vc1874 TR:Q9KQX3 (EMBL:AE004263) (516 aa) fasta scores: E(): 0, 73.5% id in 501 aa. (511 aa)    
Predicted Functional Partners:
YPO2152
Similar to Escherichia coli hypothetical protein YeaH SW:YEAH_ECOLI (P76235) (427 aa) fasta scores: E(): 0,86.7% id in 421 aa, and to Vibrio cholerae hypothetical protein VC1873 vc1873 TR:Q9KQX4 (EMBL:AE004263) (423 aa) fasta scores: E(): 0, 72.7% id in 421 aa; Belongs to the UPF0229 family.
 
  
 0.990
YPO2153
Similar to Escherichia coli hypothetical protein YeaG SW:YEAG_ECOLI (P77391) (644 aa) fasta scores: E(): 0,94.4% id in 644 aa, and to Vibrio cholerae hypothetical protein VC1872 vc1872 TR:Q9KQX5 (EMBL:AE004263) (644 aa) fasta scores: E(): 0, 84.0% id in 644 aa.
 
  
 0.990
yegP
Similar to Escherichia coli hypothetical protein YegP SW:YEGP_ECOLI (P76402) (110 aa) fasta scores: E(): 3.4e-19, 53.7% id in 108 aa, and to Pseudomonas aeruginosa hypothetical protein PA0329 TR:AAG03718 (EMBL:AE004471) (110 aa) fasta scores: E(): 6.7e-15, 49.5% id in 95 aa; Belongs to the UPF0339 family. Duplicated subfamily.
   
  
 0.846
YPO2362
Putative membrane protein; Similar to Escherichia coli hypothetical protein YohC SW:YOHC_ECOLI (P33365) (195 aa) fasta scores: E(): 0,65.5% id in 194 aa, and to Pseudomonas aeruginosa hypothetical protein PA1190 TR:AAG04579 (EMBL:AE004549) (199 aa) fasta scores: E(): 0, 52.6% id in 192 aa.
   
    0.750
uspB
Similar to Escherichia coli universal stress protein B UspB SW:USPB_ECOLI (P37632) (111 aa) fasta scores: E(): 0, 87.4% id in 111 aa, and to Vibrio cholerae hypothetical protein VC0079 TR:Q9KVR0 (EMBL:AE004099) (107 aa) fasta scores: E(): 2.9e-18, 47.7% id in 109 aa.
   
  
 0.670
phoH
Putative phosphate starvation-inducible protein; Previously sequenced as Yersinia pestis hypothetical protein TR:Q9ZC62 (EMBL:AL031866) (262 aa) fasta scores: E(): 0, 100.0% id in 262 aa. The Y. pestis ORF lacks 93 amino acid at the N-terminal end. Similar to Escherichia coli phosphate starvation-inducible protein PhoH SW:PHOH_ECOLI (P31544) (354 aa) fasta scores: E(): 0, 91.2% id in 262 aa.
   
    0.596
YPO3690
Putative ribonuclease inhibitor; Similar to Bacillus amyloliquefaciens Barstar SW:BARS_BACAM (P11540) (89 aa) fasta scores: E(): 0.00075,33.3% id in 60 aa, and to Escherichia coli hypothetical protein YhcO SW:YHCO_ECOLI (P46480) (90 aa) fasta scores: E(): 9.4e-16, 53.0% id in 83 aa.
   
    0.590
napD
Conserved hypothetical protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export.
   
    0.573
psiF
Similar to Escherichia coli phosphate starvation-inducible protein PsiF precursor psiF SW:PSIF_ECOLI (P27295) (106 aa) fasta scores: E(): 1.2e-15,54.5% id in 112 aa.
   
    0.566
nifJ
Similar to Escherichia coli probable pyruvate-flavodoxin oxidoreductase YdbK SW:NIFJ_ECOLI (P52647) (1174 aa) fasta scores: E(): 0, 80.5% id in 1177 aa, and to Klebsiella pneumoniae pyruvate-flavodoxin oxidoreductase NifJ SW:NIFJ_KLEPN (P03833) (1171 aa) fasta scores: E(): 0, 48.0% id in 1184 aa.
   
  
 0.514
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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