Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YPO2452Hypothetical protein; No significant database hits. Doubtful CDS. (42 aa)    
Predicted Functional Partners:
YPO2451
Similar to Escherichia coli hypothetical protein YceA SW:YCEA_ECOLI (P24188) (350 aa) fasta scores: E(): 0,73.9% id in 348 aa, and to Chlamydia trachomatis hypothetical protein YceA TR:O84632 (EMBL:AE001333) (327 aa) fasta scores: E(): 6.3e-29, 36.6% id in 317 aa; Belongs to the UPF0176 family.
       0.636
YPO2453
Putative membrane protein; No significant database matches.
       0.452
YPO2450
Putative membrane protein; Similar to Escherichia coli hypothetical protein YdgG SW:YDGG_ECOLI (P77535) (344 aa) fasta scores: E(): 0,60.0% id in 340 aa, and to Escherichia coli hypothetical protein YhhT SW:YHHT_ECOLI (P37622) (349 aa) fasta scores: E(): 0, 48.4% id in 343 aa.
       0.404
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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