Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
YPO2802Putative membrane protein; No significant database matches. (176 aa)    
Predicted Functional Partners:
YPO2801
Putative membrane protein; No significant database matches to the full length CDS. Similar to N-terminal region of Herpetosiphon aurantiacus methyltransferase and restriction endonuclease TR:Q47967 (EMBL:X55138) (336 aa) fasta scores: E(): 5.6e-18, 28.1% id in 359 aa.
 
     0.953
pbpC
Bifunctional penicillin-binding protein 1C (pseudogene); Pfam match to entry PF00912 Transglycosyl,Transglycosylase, score 150.20, E-value 3.7e-41; Belongs to the protease inhibitor I39 (alpha-2- macroglobulin) family. Bacterial alpha-2-macroglobulin subfamily.
  
     0.571
bglB
Similar to Thermotoga neapolitana beta-glucosidase BglB TR:Q60038 (EMBL:Z77856) (720 aa) fasta scores: E(): 0,40.5% id in 719 aa, and to Thermotoga maritima possible beta-glucosidase TM0025 TR:Q9WXN2 (EMBL:AE001690) (721 aa) fasta scores: E(): 0, 41.7% id in 729 aa; Belongs to the glycosyl hydrolase 3 family.
       0.469
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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