Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YPO2811Putative membrane protein; No significant database matches. (101 aa)    
Predicted Functional Partners:
YPO2812
Putative membrane protein; Doubtful CDS, no significant database matches.
       0.532
ynbD
Putative dual specificity phosphatase; Similar to Escherichia coli hypothetical protein YnbD SW:YNBD_ECOLI (P76093) (430 aa) fasta scores: E(): 0,49.6% id in 415 aa, and to Pseudomonas aeruginosa hypothetical protein PA2539 TR:AAG05927 (EMBL:AE004681) (437 aa) fasta scores: E(): 0, 44.0% id in 432 aa.
       0.525
YPO2814
Conserved hypothetical protein; N-terminal region similar to Mus musculus monoglyceride lipase MglL TR:O35678 (EMBL:AJ001118) (303 aa) fasta scores: E(): 7e-07, 26.5% id in 253 aa, and to Escherichia coli hypothetical protein YnbC SW:YNBC_ECOLI (P76092) (585 aa) fasta scores: E(): 0, 65.4% id in 581 aa.
       0.525
YPO2815
Putative acyltransferase; Internal region of the CDS is similar to an internal region of Brassica napus lysophosphatidic acid acyltransferase ACT2 TR:Q9LLY4 (EMBL:AF111161) (344 aa) fasta scores: E(): 1.1e-08, 29.2% id in 144 aa. Full length CDS is similar to Vibrio cholerae hypothetical protein VC1937 TR:Q9KQR1 (EMBL:AE004269) (223 aa) fasta scores: E(): 0, 47.9% id in 211 aa.
       0.525
ynbB
Similar to Escherichia coli phosphatidate cytidylyltransferase CdsA SW:CDSA_ECOLI (P06466) (249 aa) fasta scores: E(): 1.5e-14, 30.2% id in 245 aa, and to Escherichia coli hypothetical protein YnbB SW:YNBB_ECOLI (P76091) (298 aa) fasta scores: E(): 0, 57.1% id in 296 aa.
       0.525
YPO2817
Putative CDP-alcohol phosphatidyltransferase; Similar to Escherichia coli CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PgsA SW:PGSA_ECOLI (P06978) (181 aa) fasta scores: E(): 0.00091, 23.4% id in 175 aa, and to Escherichia coli hypothetical protein TR:P76090 (EMBL:AE000238) (203 aa) fasta scores: E(): 0, 55.9% id in 195 aa.
       0.525
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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