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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO3003Putative membrane protein; Similar to Bacillus subtilis hypothetical 7.4 kDa protein YhjC TR:O07557 (EMBL:Y14081) (66 aa) fasta scores: E(): 1.2e-09, 46.9% id in 64 aa. (65 aa)    
Predicted Functional Partners:
YPO3002
Putative permease; Similar to Bacillus subtilis hypothetical 52.8 kDa protein YhjB TR:O07556 (EMBL:Y14081) (489 aa) fasta scores: E(): 0, 50.2% id in 480 aa, and to Pyrococcus horikoshii hypothetical 53.4 kDa protein Ph1044 TR:O58753 (EMBL:AP000004) (491 aa) fasta scores: E(): 0, 30.1% id in 481 aa.
 
    0.956
YPO3001
Putative pyridine nucleotide-disulphide oxidoreductase; Similar to Staphylococcus aureus coenzyme A disulfide reductase TR:O52582 (EMBL:AF041467) (438 aa) fasta scores: E(): 0, 39.1% id in 445 aa, and to Vibrio cholerae NADH putative oxidase Vca0644 TR:Q9KLU7 (EMBL:AE004394) (567 aa) fasta scores: E(): 0, 49.1% id in 566 aa.
       0.596
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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