Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
YPO3151Similar to Escherichia coli hypothetical protein YbaW SW:YBAW_ECOLI (P77712) (132 aa) fasta scores: E(): 0,69.5% id in 131 aa, and to Neisseria meningitidis (serogroup A) hypothetical protein NMA0492 or NMB1959 TR:Q9JR32 (EMBL:AL162753) (127 aa) fasta scores: E(): 6.4e-12, 36.5% id in 126 aa. (135 aa)    
Predicted Functional Partners:
irp1
Previously sequenced as Yersinia pestis yersiniabactin biosynthetic protein Irp1 TR:Q9Z373 (EMBL:AL031866) (3163 aa) fasta scores: E(): 0, 100.0% id in 3163 aa. Similar to Yersinia enterocolitica HMWP1 protein Irp1 TR:O54511 (EMBL:Y12527) (3161 aa) fasta scores: E(): 0, 97.9% id in 3163 aa.
  
 0.992
fadB
Fatty acid oxidation complex alpha subunit; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
  
 
 0.720
faoA
Putative fatty oxidation complex alpha subunit,enoyl-CoA hydratase; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.707
YPO1463
Putative acyl transferase; Similar to Bacillus subtilis malonyl CoA-acyl carrier protein transacylase FabD SW:FABD_BACSU (P71019) (317 aa) fasta scores: E(): 4.5e-28, 36.2% id in 290 aa,and to Bacillus subtilis putative polyketide synthesis protein PksC TR:O34825 (EMBL:Z99112) (288 aa) fasta scores: E(): 0, 45.1% id in 275 aa.
  
 
 0.575
fabD
Similar to Escherichia coli malonyl CoA-acyl carrier protein transacylase FabD or TfpA SW:FABD_ECOLI (P25715) (308 aa) fasta scores: E(): 0, 78.5% id in 307 aa, and to Salmonella typhimurium malonyl CoA-acyl carrier protein transacylase SW:FABD_SALTY (O85140) (308 aa) fasta scores: E(): 0, 79.7% id in 306 aa.
  
 
 0.575
YPO2195
Similar to Escherichia coli putative acyl-CoA thioester hydrolase YciA precursor SW:YCIA_ECOLI (P04379) (132 aa) fasta scores: E(): 0, 82.4% id in 125 aa, and to Haemophilus influenzae putative acyl-CoA thioester hydrolase HI0827 SW:YCIA_HAEIN (P44886) (154 aa) fasta scores: E(): 0, 71.9% id in 121 aa.
  
 
 0.562
fadH
Similar to Escherichia coli 2,4-dienoyl-CoA reductase [NADPH] FadH SW:FADH_ECOLI (P42593) (671 aa) fasta scores: E(): 0, 72.7% id in 671 aa, and to Pseudomonas aeruginosa 2,4-dienoyl-CoA reductase FadH1 TR:AAG06480 (EMBL:AE004733) (679 aa) fasta scores: E(): 0,66.3% id in 670 aa.
 
  
 0.561
YPO1462
Similar to Escherichia coli acyl carrier protein AcpP SW:ACP_ECOLI (P02901) (77 aa) fasta scores: E(): 0.12,33.3% id in 63 aa, and to Vibrio marinus acyl carrier protein AcpP TR:Q9RA32 (EMBL:AB021978) (78 aa) fasta scores: E(): 0.0026, 38.4% id in 73 aa.
  
 0.496
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 0.496
b4041
Similar to Escherichia coli glycerol-3-phosphate acyltransferase PlsB SW:PLSB_ECOLI (P00482) (806 aa) fasta scores: E(): 0, 80.2% id in 802 aa; Belongs to the GPAT/DAPAT family.
   
 
 0.486
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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