Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
YPO3232Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa4792 TR:AAG08178 (EMBL:AE004892) (311 aa) fasta scores: E(): 4.4e-17, 39.1% id in 289 aa, and to Mycobacterium tuberculosis hypothetical 32.2 kDa protein Rv2277c precursor or Mtcy339.33 SW:YM77_MYCTU (Q50687) (301 aa) fasta scores: E(): 3.5e-16, 38.3% id in 290 aa. (315 aa)    
Predicted Functional Partners:
irp1
Previously sequenced as Yersinia pestis yersiniabactin biosynthetic protein Irp1 TR:Q9Z373 (EMBL:AL031866) (3163 aa) fasta scores: E(): 0, 100.0% id in 3163 aa. Similar to Yersinia enterocolitica HMWP1 protein Irp1 TR:O54511 (EMBL:Y12527) (3161 aa) fasta scores: E(): 0, 97.9% id in 3163 aa.
 
 
 
 0.689
YPO2035
Hypothetical protein; Weak similarity to Escherichia coli glycerophosphoryl diester phosphodiesterase UgpQ SW:UGPQ_ECOLI (P10908) (247 aa) fasta scores: E(): 5.8e-10,25.1% id in 207 aa, and to Agrobacterium radiobacter hypothetical protein AccF TR:O30545 (EMBL:AF010180) (305 aa) fasta scores: E(): 2.9e-18, 30.8% id in 250 aa.
  
     0.663
ugpQ
Similar to Escherichia coli glycerophosphoryl diester phosphodiesterase UgpQ SW:UGPQ_ECOLI (P10908) (247 aa) fasta scores: E(): 0, 73.0% id in 244 aa, and to Alcaligenes eutrophus Orf1 TR:Q44028 (EMBL:X91877) (248 aa) fasta scores: E(): 0, 52.5% id in 236 aa.
  
     0.622
YPO3312
Glycerol kinase; Similar to Bacillus subtilis glycerol kinase GlpK SW:GLPK_BACSU (P18157) (496 aa) fasta scores: E(): 0, 40.4% id in 492 aa, and to Thermotoga maritima glycerol kinase 2 GlpK2 or Tm1430 SW:GLK2_THEMA (Q9X1E4) (496 aa) fasta scores: E(): 0, 42.6% id in 491 aa.
  
  
 0.584
glpF
Glycerol kinase (pseudogene); PS00933 FGGY family of carbohydrate kinases signature 1; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
 
 0.541
glpQ
Similar to Escherichia coli periplasmic glycerophosphoryl diester phosphodiesterase GlpQ SW:GLPQ_ECOLI (P09394) (358 aa) fasta scores: E(): 0, 73.6% id in 363 aa, and to Haemophilus influenzae glycerophosphoryl diester phosphodiesterase precursor GlpQ SW:GLPQ_HAEIN (Q06282) (364 aa) fasta scores: E(): 0, 63.3% id in 362 aa.
  
  
 0.468
irp3
Previously sequenced as Yersinia pestis yersiniabactin biosynthetic protein YbtU TR:Q9Z3C6 (EMBL:AL031866) (365 aa) fasta scores: E(): 0, 100.0% id in 365 aa. Similar to Yersinia enterocolitica Irp3 protein TR:O54512 (EMBL:Y12527) (365 aa) fasta scores: E(): 0,97.8% id in 365 aa.
  
     0.467
YPO3721
Hemolysin; Similar to Serratia marcescens hemolysin precursor ShlA SW:HLYA_SERMA (P15320) (1608 aa) fasta scores: E(): 0,42.5% id in 1657 aa, and to Edwardsiella tarda hemolysin EthA TR:O32608 (EMBL:D89876) (1594 aa) fasta scores: E(): 0, 36.4% id in 1660 aa.
  
     0.460
YPO2593
Putative LuxR-family regulatory proteins; Similar to Salmonella typhimurium fimbriae W protein FimW SW:FIMW_SALTY (P37928) (198 aa) fasta scores: E(): 0.0066, 21.9% id in 178 aa, and to C-terminus of Erwinia amylovora activator of exopolysaccharide synthesis, RcsB TR:P96320 (EMBL:Y09848) (215 aa) fasta scores: E(): 0.0003,43.7% id in 71 aa.
  
     0.435
wecF
Conserved hypothetical protein; Catalyzes the synthesis of Und-PP-GlcNAc-ManNAcA-Fuc4NAc (Lipid III), the third lipid-linked intermediate involved in ECA synthesis; Belongs to the glycosyltransferase 56 family.
  
  
 0.430
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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