STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO3258Putative membrane protein; No significant database matches. (71 aa)    
Predicted Functional Partners:
YPO3259
Putative rpiR-family transcriptional regulatory protein; Similar to Pseudomonas aeruginosa hypothetical protein PA5506 TR:AAG08891 (EMBL:AE004963) (285 aa) fasta scores: E(): 2.8e-11, 26.0% id in 281 aa, and to Bacillus halodurans BH2940 protein TR:Q9K8R3 (EMBL:AP001517) (284 aa) fasta scores: E(): 6.7e-11, 23.1% id in 277 aa.
       0.773
YPO3257
Putative amino acid ABC transporter, periplasmic protein; Similar to Helicobacter pylori amino acid binding protein CjaA TR:Q9RNF9 (EMBL:AF181878) (287 aa) fasta scores: E(): 2.5e-18, 32.5% id in 228 aa, and to Pseudomonas aeruginosa probable binding protein component of ABC transporter Pa2204 TR:AAG05592 (EMBL:AE004647) (268 aa) fasta scores: E(): 1.1e-19, 34.5% id in 252 aa; Belongs to the bacterial solute-binding protein 3 family.
       0.515
YPO3254
Putative amino acid ABC transporter, ATP-binding protein; Similar to Bacillus stearothermophilus glutamine transport ATP-binding protein GlnQ SW:GLNQ_BACST (P27675) (242 aa) fasta scores: E(): 0, 54.0% id in 239 aa, and to Archaeoglobus fulgidus glutamine ABC transporter,ATP-binding protein Af0680 TR:O29577 (EMBL:AE001058) (242 aa) fasta scores: E(): 0, 55.6% id in 241 aa.
       0.505
YPO3255
Similar to Escherichia coli hypothetical amino-acid ABC transporter permease protein YecS SW:YECS_ECOLI (P76315) (222 aa) fasta scores: E(): 6.3e-21, 36.3% id in 204 aa, and to Thermotoga maritima amino acid ABC transporter, permease protein Tm0592 TR:Q9WZ61 (EMBL:AE001734) (216 aa) fasta scores: E(): 4.3e-20, 36.3% id in 201 aa.
       0.505
YPO3256
Similar to Thermotoga maritima amino acid ABC transporter, permease protein Tm0592 TR:Q9WZ61 (EMBL:AE001734) (216 aa) fasta scores: E(): 1.3e-25, 43.6% id in 204 aa, and to Deinococcus radiodurans amino acid ABC transporter, permease protein Dr1028 TR:Q9RVK0 (EMBL:AE001954) (216 aa) fasta scores: E(): 8.4e-24, 39.6% id in 202 aa.
       0.505
YPO3260
Hypothetical protein; No significant database hits.
       0.406
YPO3261
Probable amidase; Similar to Mycobacterium smegmatis nicotinamidase/pyrazinamidase PzaA TR:Q9ZHK8 (EMBL:AF058285) (468 aa) fasta scores: E(): 0, 34.4% id in 453 aa, and to Rhodococcus sp. enantiomerase-selective amidase AmdA TR:Q53116 (EMBL:M74531) (462 aa) fasta scores: E(): 0, 33.8% id in 461 aa.
       0.406
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.