Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
YPO3545Conserved hypothetical protein (pseudogene); Pfam match to entry PF00043 GST, Glutathione S-transferases., score 24.60, E-value 1.8e-06; Belongs to the LysR transcriptional regulatory family. (297 aa)    
Predicted Functional Partners:
YPO3546
Similar to Escherichia coli hypothetical protein YhaK SW:YHAK_ECOLI (P42624) (233 aa) fasta scores: E(): 0,68.8% id in 234 aa; Belongs to the pirin family.
 
   
 0.642
yebY
Putative exported protein; Similar to Escherichia coli hypothetical 12.4 kDa protein in pphA-holE intergenic region YebY SW:YEBY_ECOLI (P76277) (113 aa) fasta scores: E(): 4.9e-26, 60.7% id in 112 aa.
  
     0.634
ail
Similar to Yersinia enterocolitica attachment invasion locus protein precursor Ail SW:AIL_YEREN (P16454) (178 aa) fasta scores: E(): 3.3e-28, 47.8% id in 184 aa,and to Yersinia pseudotuberculosis attachment invasion locus protein precursor Ail SW:AIL_YERPS (Q56957) (182 aa) fasta scores: E(): 5.8e-26, 44.8% id in 183 aa. Similar to YPO2905, YPO2190 and YPO2506.
  
     0.582
omp4
Similar to Serratia marcescens outer membrane protein Omp4 TR:Q54470 (EMBL:Z37157) (172 aa) fasta scores: E(): 0, 74.1% id in 174 aa, and to Escherichia coli outer membrane protein OmpX SW:OMPX_ECOLI (P36546) (171 aa) fasta scores: E(): 0, 70.7% id in 174 aa.
  
     0.563
ail-2
Similar to Yersinia enterocolitica attachment invasion locus protein precursor Ail SW:AIL_YEREN (P16454) (178 aa) fasta scores: E(): 2.6e-29, 46.1% id in 178 aa,and to Yersinia pseudotuberculosis attachment invasion locus protein precursor Ail SW:AIL_YERPS (Q56957) (182 aa) fasta scores: E(): 2.9e-28, 45.1% id in 173 aa.
  
     0.551
ail-3
Similar to Yersinia pseudotuberculosis attachment invasion locus protein Ail SW:AIL_YERPS (Q56957) (182 aa) fasta scores: E(): 0, 98.4% id in 182 aa, and to Yersinia enterocolitica attachment invasion locus protein precursor Ail SW:AIL_YEREN (P16454) (178 aa) fasta scores: E(): 0,74.3% id in 179 aa, and to Serratia marcescens outer membrane protein precursor Omp4 TR:Q54470 (EMBL:Z37157) (172 aa) fasta scores: E(): 3.3e-23, 43.7% id in 183 aa.
  
     0.532
YPO2521
Putative exported protein; Similar to Escherichia coli hypothetical protein YbiJ SW:YBIJ_ECOLI (P41038) (86 aa) fasta scores: E(): 9.4e-15, 54.7% id in 86 aa, and to Escherichia coli hypothetical protein YcfR SW:YCFR_ECOLI (P75953) (85 aa) fasta scores: E(): 4.8e-14, 55.8% id in 86 aa.
  
   
 0.511
hdfR
LysR-family transcriptional regulatory protein; Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon.
  
     0.439
b4390
Similar to Salmonella typhimurium transcriptional regulator NadR SW:NADR_SALTY (P24518) (409 aa) fasta scores: E(): 0, 85.0% id in 406 aa, and to Escherichia coli transcriptional regulator NadR SW:NADR_ECOLI (P27278) (410 aa) fasta scores: E(): 0, 83.7% id in 406 aa.
  
    0.423
holE
Similar to Escherichia coli DNA polymerase III,theta subunit HolE SW:HOLE_ECOLI (P28689) (76 aa) fasta scores: E(): 3.5e-16, 64.5% id in 76 aa.
  
     0.423
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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