Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YPO3602Similar to Vibrio cholerae hypothetical protein VCA0119 TR:Q9KN46 (EMBL:AE004353) (469 aa) fasta scores: E(): 0, 36.4% id in 451 aa. (465 aa)    
Predicted Functional Partners:
YPO3603
Putative exported protein; Similar to Vibrio cholerae IcmF-related protein vca0120 TR:Q9KN45 (EMBL:AE004353) (1181 aa) fasta scores: E(): 0, 37.3% id in 1183 aa.
 
 0.962
YPO3595
Similar to Vibrio cholerae hypothetical protein VCA0112 TR:Q9KN53 (EMBL:AE004353) (495 aa) fasta scores: E(): 3.8e-28, 31.3% id in 486 aa.
 
  
 0.958
YPO3596
Putative lipoprotein; Similar to Vibrio cholerae hypothetical protein Vca0113 TR:Q9KN52 (EMBL:AE004353) (158 aa) fasta scores: E(): 3e-16, 38.6% id in 132 aa.
 
  
 0.953
YPO3594
Conserved hypothetical protein (pseudogene); The 5'-region of this CDS has been deleted by either the original IS1661 insertion or by the subsequent insertion of a IS100 element. Similar to Vibrio cholerae hypothetical protein Vca0110 TR:Q9KN55 (EMBL:AE004353) (589 aa) fasta scores: E(): 0, 55.5% id in 245 aa and to Escherichia coli O157:H7 Z0260 hypothetical protein TR:AAG54529 (EMBL:AE005198) (616 aa) fasta scores: E(): 0,53.9% id in 245 aa.
 
 
 0.944
YPO3598
Putative membrane protein; Similar to Vibrio cholerae hypothetical protein Vca0115 TR:Q9KN50 (EMBL:AE004353) (257 aa) fasta scores: E(): 0, 38.7% id in 243 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0078 TR:AAG03468 (EMBL:AE004447) (449 aa) fasta scores: E(): 1.7e-22, 32.3% id in 229 aa.
 
  
 0.937
YPO3597
Similar to Vibrio cholerae hypothetical protein VCA0114 TR:Q9KN51 (EMBL:AE004353) (444 aa) fasta scores: E(): 0, 49.0% id in 447 aa, and to Pseudomonas aeruginosa hypothetical protein PA0079 TR:AAG03469 (EMBL:AE004447) (444 aa) fasta scores: E(): 0, 40.8% id in 448 aa.
 
 
 0.894
YPO3604
Hypothetical protein; No significant database hits.
 
   
 0.880
clpB2
Clp ATPase; Similar to Escherichia coli ClpB protein, which is thought to form part of a multi-chaperone system supressing protein aggregation, SW:CLPB_ECOLI (P03815) (857 aa) fasta scores: E(): 0, 40.4% id in 727 aa and Yersinia enterocolitica Clp protease-associated protein ClpB TR:AAG00524 (EMBL:AF285784) (890 aa) fasta scores: E(): 0,42.4% id in 863 aa. Also significantly similar to the products of the Y. pestis CDS: YPO0506, YPO0971, YPO1471,YPO2946 and YPO3275; Belongs to the ClpA/ClpB family.
 
 
  0.865
YPO3601
Similar to Vibrio cholerae hypothetical protein VCA0118 TR:Q9KN47 (EMBL:AE004353) (227 aa) fasta scores: E(): 5.4e-11, 31.6% id in 209 aa.
     
 0.830
YPO3705
Conserved hypothetical protein (pseudogene); This CDS is disrupted by the insertion of an IS166 element. It is lacking ~250 amino acids at its C-terminal region. This truncated CDS is similar to Escherichia coli O157:H7 Z0260 protein TR:AAG54529 (EMBL:AE005198) (616 aa) fasta scores: E(): 0, 51.0% id in 357 aa, and to Vibrio cholerae hypothetical protein Vca0110 TR:Q9KN55 (EMBL:AE004353) (589 aa) fasta scores: E(): 0, 45.7% id in 350 aa.
 
  
 0.820
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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