STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO3604Hypothetical protein; No significant database hits. (260 aa)    
Predicted Functional Partners:
YPO3594
Conserved hypothetical protein (pseudogene); The 5'-region of this CDS has been deleted by either the original IS1661 insertion or by the subsequent insertion of a IS100 element. Similar to Vibrio cholerae hypothetical protein Vca0110 TR:Q9KN55 (EMBL:AE004353) (589 aa) fasta scores: E(): 0, 55.5% id in 245 aa and to Escherichia coli O157:H7 Z0260 hypothetical protein TR:AAG54529 (EMBL:AE005198) (616 aa) fasta scores: E(): 0,53.9% id in 245 aa.
 
 
  0.882
YPO3602
Similar to Vibrio cholerae hypothetical protein VCA0119 TR:Q9KN46 (EMBL:AE004353) (469 aa) fasta scores: E(): 0, 36.4% id in 451 aa.
 
     0.875
YPO3595
Similar to Vibrio cholerae hypothetical protein VCA0112 TR:Q9KN53 (EMBL:AE004353) (495 aa) fasta scores: E(): 3.8e-28, 31.3% id in 486 aa.
 
  
 0.869
YPO3596
Putative lipoprotein; Similar to Vibrio cholerae hypothetical protein Vca0113 TR:Q9KN52 (EMBL:AE004353) (158 aa) fasta scores: E(): 3e-16, 38.6% id in 132 aa.
 
  
 0.867
YPO3605
Conserved hypothetical protein; Similar to Arabidopsis thaliana F15P11.1 protein TR:Q9S9U2 (EMBL:AF160760) (187 aa) fasta scores: E(): 0.024, 31.5% id in 143 aa.
 
    0.860
YPO3603
Putative exported protein; Similar to Vibrio cholerae IcmF-related protein vca0120 TR:Q9KN45 (EMBL:AE004353) (1181 aa) fasta scores: E(): 0, 37.3% id in 1183 aa.
 
 
 0.858
YPO3608
Putative exported protein; Similar to Escherichia coli CorE protein TR:O52666 (EMBL:AF044501) (1420 aa) fasta scores: E(): 8.3e-32, 27.7% id in 824 aa, and to Escherichia coli RhsD protein precursor SW:RHSD_ECOLI (P16919) (1426 aa) fasta scores: E(): 1.4e-28, 27.3% id in 842 aa.
 
  
 0.807
YPO1486
Similar to Vibrio cholerae hypothetical protein VCA0111 TR:Q9KN54 (EMBL:AE004353) (338 aa) fasta scores: E(): 9.8e-19, 27.3% id in 322 aa, and to Escherichia coli O157:H7 hypothetical protein Z0259 TR:AAG54528 (EMBL:AE005198) (360 aa) fasta scores: E(): 2e-17, 30.9% id in 317 aa.
 
 
  0.799
YPO3705
Conserved hypothetical protein (pseudogene); This CDS is disrupted by the insertion of an IS166 element. It is lacking ~250 amino acids at its C-terminal region. This truncated CDS is similar to Escherichia coli O157:H7 Z0260 protein TR:AAG54529 (EMBL:AE005198) (616 aa) fasta scores: E(): 0, 51.0% id in 357 aa, and to Vibrio cholerae hypothetical protein Vca0110 TR:Q9KN55 (EMBL:AE004353) (589 aa) fasta scores: E(): 0, 45.7% id in 350 aa.
 
  
 0.788
YPO3606
Putative Rhs accessory genetic element; Similar to Escherichia coli VgrG protein TR:O52672 (EMBL:AF044503) (713 aa) fasta scores: E(): 0, 49.9% id in 579 aa, and to Escherichia coli VgrE protein TR:O52660 (EMBL:AF044499) (702 aa) fasta scores: E(): 0, 49.3% id in 576 aa. Similar to YPO3613 (78.0% identity in 803 aa overlap) and to YPO0764 (77.2% identity in 615 aa overlap).
 
    0.772
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.