STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppBSimilar to Escherichia coli dipeptide transport system permease protein DppB SW:DPPB_ECOLI (P37316) (339 aa) fasta scores: E(): 0, 87.7% id in 309 aa, and to Pseudomonas aeruginosa probable permease of ABC transporter PA4503 TR:AAG07891 (EMBL:AE004864) (336 aa) fasta scores: E(): 0, 65.0% id in 309 aa. (315 aa)    
Predicted Functional Partners:
dppD
Similar to Escherichia coli dipeptide transport ATP-binding protein DppD SW:DPPD_ECOLI (P37314) (327 aa) fasta scores: E(): 0, 87.8% id in 327 aa, and to Pasteurella multocida dipeptide transport ATP-binding protein DppD TR:AAK02323 (EMBL:AE006058) (332 aa) fasta scores: E(): 0, 78.8% id in 325 aa; Belongs to the ABC transporter superfamily.
 
 0.998
dppC
Similar to Escherichia coli dipeptide transport system permease protein DppC SW:DPPC_ECOLI (P37315) (300 aa) fasta scores: E(): 0, 88.0% id in 300 aa, and to Pseudomonas aeruginosa probable permease of ABC transporter PA4504 TR:AAG07892 (EMBL:AE004864) (303 aa) fasta scores: E(): 0, 63.6% id in 283 aa.
 
 0.998
dppA
Similar to Escherichia coli periplasmic dipeptide transport protein precursor DppA SW:DPPA_ECOLI (P23847) (535 aa) fasta scores: E(): 0, 84.9% id in 535 aa, and to Pseudomonas aeruginosa probable binding protein component of ABC transporter PA4496 TR:AAG07884 (EMBL:AE004863) (537 aa) fasta scores: E(): 0, 52.2% id in 538 aa.
 0.995
dppE
Endoglucanase (pseudogene); Pfam match to entry PF01270 Glyco_hydro_8, Glycosyl hydrolases family 8, score -68.20, E-value 1.9e-06; Belongs to the ABC transporter superfamily.
 
 0.993
YPO3452
Putative ABC transporter transporter, ATP-binding protein; Similar to Escherichia coli dipeptide transport ATP-binding protein DppD SW:DPPD_ECOLI (P37314) (327 aa) fasta scores: E(): 1.9e-26, 42.1% id in 271 aa, and to Pyrococcus abyssi peptide ABC transporter ATP-binding protein Pab1874 TR:Q9V0P6 (EMBL:AJ248285) (329 aa) fasta scores: E(): 2.2e-31, 37.7% id in 289 aa.
 
 0.946
YPO3451
Similar to Escherichia coli dipeptide transport system permease protein DppC SW:DPPC_ECOLI (P37315) (300 aa) fasta scores: E(): 0, 42.3% id in 279 aa, and to Pseudomonas aeruginosa probable permease of ABC transporter Pa4504 TR:AAG07892 (EMBL:AE004864) (303 aa) fasta scores: E(): 0, 43.4% id in 279 aa.
 
 0.943
oppD
Similar to Escherichia coli oligopeptide transport ATP-binding protein OppD SW:OPPD_ECOLI (P76027) (337 aa) fasta scores: E(): 0, 87.3% id in 323 aa, and to Salmonella typhimurium oligopeptide transport ATP-binding protein OppD SW:OPPD_SALTY (P04285) (335 aa) fasta scores: E(): 0, 87.0% id in 322 aa; Belongs to the ABC transporter superfamily.
 0.938
YPO2662
Binding-protein-dependent transport protein; Similar to Salmonella typhimurium anaerobically induced, fnr-dependent, putative transmembrane protein Oxd-6C TR:O34158 (EMBL:U94729) (270 aa) fasta scores: E(): 0, 61.7% id in 266 aa, and to Streptococcus pyogenes transmembrane transport protein DppC TR:Q9ZAS4 (EMBL:U78968) (274 aa) fasta scores: E(): 0, 40.8% id in 255 aa.
 
 
 0.932
oppC
Similar to Escherichia coli oligopeptide transport system permease protein OppC SW:OPPC_ECOLI (P77664) (302 aa) fasta scores: E(): 0, 92.4% id in 301 aa, and to Salmonella typhimurium oligopeptide transport system permease protein OppC SW:OPPC_SALTY (P08006) (302 aa) fasta scores: E(): 0, 91.7% id in 301 aa.
 
 0.922
oppF
Similar to Escherichia coli oligopeptide transport ATP-binding protein OppF SW:OPPF_ECOLI (P77737) (334 aa) fasta scores: E(): 0, 90.4% id in 334 aa, and to Salmonella typhimurium oligopeptide transport ATP-binding protein OppF SW:OPPF_SALTY (P08007) (334 aa) fasta scores: E(): 0, 89.8% id in 334 aa; Belongs to the ABC transporter superfamily.
 
 0.921
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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