Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OJG18158.1 | OJG18834.1 | RU97_GL002231 | RU97_GL001452 | MIP family channel protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. | Protein phosphatase 2C. | 0.754 |
OJG18833.1 | OJG18834.1 | RU97_GL001451 | RU97_GL001452 | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Protein phosphatase 2C. | 0.950 |
OJG18833.1 | OJG18835.1 | RU97_GL001451 | RU97_GL001453 | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Serine/threonine protein kinase. | 0.903 |
OJG18833.1 | OJG18837.1 | RU97_GL001451 | RU97_GL001455 | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. | 0.806 |
OJG18833.1 | def-2 | RU97_GL001451 | RU97_GL001449 | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.947 |
OJG18833.1 | fmt | RU97_GL001451 | RU97_GL001450 | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.998 |
OJG18833.1 | gmk | RU97_GL001451 | RU97_GL001446 | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | 0.857 |
OJG18833.1 | priA | RU97_GL001451 | RU97_GL001448 | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.896 |
OJG18833.1 | rpoZ | RU97_GL001451 | RU97_GL001447 | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.968 |
OJG18833.1 | rsgA | RU97_GL001451 | RU97_GL001454 | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.873 |
OJG18834.1 | OJG18158.1 | RU97_GL001452 | RU97_GL002231 | Protein phosphatase 2C. | MIP family channel protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. | 0.754 |
OJG18834.1 | OJG18833.1 | RU97_GL001452 | RU97_GL001451 | Protein phosphatase 2C. | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.950 |
OJG18834.1 | OJG18835.1 | RU97_GL001452 | RU97_GL001453 | Protein phosphatase 2C. | Serine/threonine protein kinase. | 0.998 |
OJG18834.1 | OJG18837.1 | RU97_GL001452 | RU97_GL001455 | Protein phosphatase 2C. | Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. | 0.798 |
OJG18834.1 | def-2 | RU97_GL001452 | RU97_GL001449 | Protein phosphatase 2C. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.820 |
OJG18834.1 | fmt | RU97_GL001452 | RU97_GL001450 | Protein phosphatase 2C. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.959 |
OJG18834.1 | gmk | RU97_GL001452 | RU97_GL001446 | Protein phosphatase 2C. | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | 0.746 |
OJG18834.1 | priA | RU97_GL001452 | RU97_GL001448 | Protein phosphatase 2C. | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.870 |
OJG18834.1 | rpoZ | RU97_GL001452 | RU97_GL001447 | Protein phosphatase 2C. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.726 |
OJG18834.1 | rsgA | RU97_GL001452 | RU97_GL001454 | Protein phosphatase 2C. | Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.911 |
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