M0RFP3_MUSAM protein (Musa acuminata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

M0RFP3_MUSAM

Uncharacterized protein. (228 aa)

Predicted Functional Partners:

M0TRX2_MUSAM

0.534

M0TWL1_MUSAM

0.529

M0SQB2_MUSAM

0.523

M0SLU7_MUSAM

0.522

M0SNV6_MUSAM

0.521

M0RLF0_MUSAM

0.519

M0UC34_MUSAM

0.514

M0STB7_MUSAM

0.509

M0SXI1_MUSAM

0.502

M0TYU8_MUSAM

0.499

Your Current Organism:

Musa acuminata

NCBI taxonomy Id: 214687
Other names: M. acuminata subsp. malaccensis, Musa acuminata subsp. malaccensis, Musa acuminata subsp. malaccensis (Ridl.) N.W.Simmonds, Musa acuminata var. malaccensis, Musa acuminata var. malaccensis (Ridl.) Nasution, pisang utan, true apple banana, wild Malaysian banana

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M0RFP3_MUSAM	M0RLF0_MUSAM	M0RFP3	M0RLF0	Uncharacterized protein.	Uncharacterized protein.	0.519
M0RFP3_MUSAM	M0SLU7_MUSAM	M0RFP3	M0SLU7	Uncharacterized protein.	DUF4378 domain-containing protein.	0.522
M0RFP3_MUSAM	M0SNV6_MUSAM	M0RFP3	M0SNV6	Uncharacterized protein.	DUF4378 domain-containing protein.	0.521
M0RFP3_MUSAM	M0SQB2_MUSAM	M0RFP3	M0SQB2	Uncharacterized protein.	Uncharacterized protein.	0.523
M0RFP3_MUSAM	M0STB7_MUSAM	M0RFP3	M0STB7	Uncharacterized protein.	H15 domain-containing protein.	0.509
M0RFP3_MUSAM	M0SXI1_MUSAM	M0RFP3	M0SXI1	Uncharacterized protein.	Uncharacterized protein.	0.502
M0RFP3_MUSAM	M0TRX2_MUSAM	M0RFP3	M0TRX2	Uncharacterized protein.	DUF4005 domain-containing protein.	0.534
M0RFP3_MUSAM	M0TWL1_MUSAM	M0RFP3	M0TWL1	Uncharacterized protein.	AvrRpt-cleavage domain-containing protein.	0.529
M0RFP3_MUSAM	M0TYU8_MUSAM	M0RFP3	M0TYU8	Uncharacterized protein.	CaM_binding domain-containing protein.	0.499
M0RFP3_MUSAM	M0UC34_MUSAM	M0RFP3	M0UC34	Uncharacterized protein.	AvrRpt-cleavage domain-containing protein.	0.514
M0RLF0_MUSAM	M0RFP3_MUSAM	M0RLF0	M0RFP3	Uncharacterized protein.	Uncharacterized protein.	0.519
M0RLF0_MUSAM	M0SLU7_MUSAM	M0RLF0	M0SLU7	Uncharacterized protein.	DUF4378 domain-containing protein.	0.531
M0RLF0_MUSAM	M0SNV6_MUSAM	M0RLF0	M0SNV6	Uncharacterized protein.	DUF4378 domain-containing protein.	0.535
M0RLF0_MUSAM	M0SQB2_MUSAM	M0RLF0	M0SQB2	Uncharacterized protein.	Uncharacterized protein.	0.515
M0RLF0_MUSAM	M0STB7_MUSAM	M0RLF0	M0STB7	Uncharacterized protein.	H15 domain-containing protein.	0.509
M0RLF0_MUSAM	M0SXI1_MUSAM	M0RLF0	M0SXI1	Uncharacterized protein.	Uncharacterized protein.	0.521
M0RLF0_MUSAM	M0TRX2_MUSAM	M0RLF0	M0TRX2	Uncharacterized protein.	DUF4005 domain-containing protein.	0.539
M0RLF0_MUSAM	M0TWL1_MUSAM	M0RLF0	M0TWL1	Uncharacterized protein.	AvrRpt-cleavage domain-containing protein.	0.498
M0RLF0_MUSAM	M0TYU8_MUSAM	M0RLF0	M0TYU8	Uncharacterized protein.	CaM_binding domain-containing protein.	0.521
M0RLF0_MUSAM	M0UC34_MUSAM	M0RLF0	M0UC34	Uncharacterized protein.	AvrRpt-cleavage domain-containing protein.	0.491

page 1 of 6

Server load: low (16%) [HD]

Permalink

Network

Cooccurrence

Experiments

Neighborhood

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About