STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M0SI90_MUSAMRNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (451 aa)    
Predicted Functional Partners:
M0RSX9_MUSAM
Helicase ATP-binding domain-containing protein.
    
 0.996
M0RWQ6_MUSAM
General transcription factor IIH subunit.
   
 0.996
M0S0H9_MUSAM
Uncharacterized protein.
    
 0.996
M0S2F0_MUSAM
Uncharacterized protein.
    
 0.996
M0TGS1_MUSAM
Uncharacterized protein.
   
 0.996
M0U1N4_MUSAM
CYCLIN domain-containing protein; Belongs to the cyclin family.
    
 0.996
M0SNM9_MUSAM
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
    
 0.992
M0SVP2_MUSAM
Uncharacterized protein.
    
 0.992
M0S0U7_MUSAM
RPOL4c domain-containing protein.
    
 0.989
M0U2U0_MUSAM
Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
    
  0.989
Your Current Organism:
Musa acuminata
NCBI taxonomy Id: 214687
Other names: M. acuminata subsp. malaccensis, Musa acuminata subsp. malaccensis, Musa acuminata subsp. malaccensis (Ridl.) N.W.Simmonds, Musa acuminata var. malaccensis, Musa acuminata var. malaccensis (Ridl.) Nasution, pisang utan, true apple banana, wild Malaysian banana
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.