STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M0U4U2_MUSAMUncharacterized protein. (288 aa)    
Predicted Functional Partners:
M0REW5_MUSAM
SF3b1 domain-containing protein.
   
 0.974
M0TE50_MUSAM
Uncharacterized protein.
    
 0.965
M0SVK2_MUSAM
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.956
M0TZT4_MUSAM
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.956
M0RK38_MUSAM
Uncharacterized protein.
    
 0.954
M0S029_MUSAM
PSP domain-containing protein.
   
 0.952
M0S4X7_MUSAM
Uncharacterized protein.
   
 0.952
M0SME5_MUSAM
Tr-type G domain-containing protein.
   
 
 0.952
M0T1I7_MUSAM
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
   
 0.952
M0SPV6_MUSAM
RRM domain-containing protein.
    
 0.950
Your Current Organism:
Musa acuminata
NCBI taxonomy Id: 214687
Other names: M. acuminata subsp. malaccensis, Musa acuminata subsp. malaccensis, Musa acuminata subsp. malaccensis (Ridl.) N.W.Simmonds, Musa acuminata var. malaccensis, Musa acuminata var. malaccensis (Ridl.) Nasution, pisang utan, true apple banana, wild Malaysian banana
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.