STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN45085.1Hypothetical protein. (103 aa)    
Predicted Functional Partners:
SEN44883.1
Hypothetical protein.
 
     0.930
SEN44815.1
Protein of unknown function.
 
     0.926
SEN44947.1
PrgI family protein.
 
     0.917
SEN45003.1
Hypothetical protein.
 
     0.916
SEN45154.1
Protein of unknown function.
 
     0.868
SEN45187.1
Phage DNA replication protein (predicted replicative helicase loader).
 
   
 0.855
SEN44920.1
Type IV secretory pathway, VirB4 component.
 
     0.842
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
 
 0.839
SEN45038.1
Maff2 family protein.
 
   
 0.829
SEN45399.1
DNA polymerase III catalytic subunit, DnaE type.
    
 0.809
Your Current Organism:
Peptostreptococcus russellii
NCBI taxonomy Id: 215200
Other names: CCUG 58235, DSM 23041, NRRL B-59380, P. russellii, Peptostreptococcus russellii Whitehead et al. 2011, strain RT-10B, swine manure bacterium 37-1, swine manure bacterium RT-10B, swine manure bacterium RT-13B, swine manure bacterium RT-18B, swine manure bacterium RT-19A, swine manure bacterium RT-23A, swine manure bacterium RT-8A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.