STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN57789.1Flavodoxin, short chain. (142 aa)    
Predicted Functional Partners:
SEN57761.1
Protein of unknown function.
 
     0.945
SEN65539.1
Superoxide reductase.
  
  
 0.496
SEN77424.1
Rubredoxin.
  
  
 0.492
SEN71144.1
Energy-coupling factor transport system substrate-specific component.
 
  
 0.464
SEN45901.1
Transcriptional regulator, XRE family.
  
  
 0.454
SEN15606.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
  
 0.451
SEN27740.1
Glutamine synthetase.
  
  
 0.440
SEN57730.1
Cytochrome c-type biogenesis protein.
     
 0.430
Your Current Organism:
Peptostreptococcus russellii
NCBI taxonomy Id: 215200
Other names: CCUG 58235, DSM 23041, NRRL B-59380, P. russellii, Peptostreptococcus russellii Whitehead et al. 2011, strain RT-10B, swine manure bacterium 37-1, swine manure bacterium RT-10B, swine manure bacterium RT-13B, swine manure bacterium RT-18B, swine manure bacterium RT-19A, swine manure bacterium RT-23A, swine manure bacterium RT-8A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.