STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PV06_10729Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1412 aa)    
Predicted Functional Partners:
PV06_08771
Uncharacterized protein.
    
 0.999
PV06_08790
Pre-mRNA-splicing factor syf1.
   
 0.999
PV06_02015
Pre-mRNA-splicing factor clf1.
    
 0.999
PV06_07297
RRM domain-containing protein.
    
 0.998
PV06_01759
Pre-mRNA-processing protein 45.
    
  0.998
PV06_09663
Uncharacterized protein.
    
  0.998
PV06_04518
Pre-mRNA-splicing factor slt11.
    
 0.998
PV06_05217
Pre-mRNA-splicing factor isy1.
    
 0.997
PV06_03470
Uncharacterized protein.
    
 0.994
PV06_09376
Tr-type G domain-containing protein.
   
 
 0.988
Your Current Organism:
Exophiala oligosperma
NCBI taxonomy Id: 215243
Other names: CBS 265.49, CBS 725.88, E. oligosperma, Exophiala oligosperma Calendron ex de Hoog & Tintelnot, Exophiala sp. CBS 725.88
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.