STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PV06_07975Nitroreductase domain-containing protein. (272 aa)    
Predicted Functional Partners:
PV06_09967
Uncharacterized protein.
    
 0.833
PV06_05116
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
 0.833
PV06_10287
Uncharacterized protein.
    
 0.833
PV06_01212
RPOL4c domain-containing protein.
    
 0.833
PV06_04994
Uncharacterized protein.
    
 0.833
PV06_05135
RPOLD domain-containing protein.
    
 0.833
PV06_06560
RPOL9 domain-containing protein.
    
 0.833
PV06_00773
Uncharacterized protein.
    
 0.833
PV06_05644
RNA_pol_L_2 domain-containing protein.
    
 0.832
PV06_01078
TFIIB-type domain-containing protein.
    
 0.818
Your Current Organism:
Exophiala oligosperma
NCBI taxonomy Id: 215243
Other names: CBS 265.49, CBS 725.88, E. oligosperma, Exophiala oligosperma Calendron ex de Hoog & Tintelnot, Exophiala sp. CBS 725.88
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