PV06_11685 protein (Exophiala oligosperma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PV06_11685

Uncharacterized protein. (490 aa)

Predicted Functional Partners:

PV06_03434

0.594

PV06_03046

0.550

PV06_00706

0.537

PV06_09618

0.522

PV06_09148

0.508

PV06_08239

0.508

PV06_06122

0.506

PV06_11752

0.488

PV06_03634

0.484

PV06_06531

0.484

Your Current Organism:

Exophiala oligosperma

NCBI taxonomy Id: 215243
Other names: CBS 265.49, CBS 725.88, E. oligosperma, Exophiala oligosperma Calendron ex de Hoog & Tintelnot, Exophiala sp. CBS 725.88

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV06_00706	PV06_03434	A0A0D2EJJ5	A0A0D2AYZ2	Uncharacterized protein.	Xanthine dehydrogenase.	0.739
PV06_00706	PV06_11685	A0A0D2EJJ5	A0A0D2D1F5	Uncharacterized protein.	Uncharacterized protein.	0.537
PV06_03046	PV06_11685	A0A0D2C4A0	A0A0D2D1F5	Uncharacterized protein.	Uncharacterized protein.	0.550
PV06_03434	PV06_00706	A0A0D2AYZ2	A0A0D2EJJ5	Xanthine dehydrogenase.	Uncharacterized protein.	0.739
PV06_03434	PV06_11685	A0A0D2AYZ2	A0A0D2D1F5	Xanthine dehydrogenase.	Uncharacterized protein.	0.594
PV06_03634	PV06_06531	A0A0D2C5Y1	A0A0D2DZD6	Uncharacterized protein.	Cell division control protein 42, variant.	0.489
PV06_03634	PV06_08239	A0A0D2C5Y1	A0A0D2BQ21	Uncharacterized protein.	PlsC domain-containing protein.	0.650
PV06_03634	PV06_09148	A0A0D2C5Y1	A0A0D2BPA7	Uncharacterized protein.	Uncharacterized protein.	0.650
PV06_03634	PV06_09618	A0A0D2C5Y1	A0A0D2BML0	Uncharacterized protein.	Uncharacterized protein.	0.846
PV06_03634	PV06_11685	A0A0D2C5Y1	A0A0D2D1F5	Uncharacterized protein.	Uncharacterized protein.	0.484
PV06_03634	PV06_11752	A0A0D2C5Y1	A0A0D2A6F5	Uncharacterized protein.	Protein kinase domain-containing protein.	0.862
PV06_06122	PV06_11685	A0A0D2BYQ1	A0A0D2D1F5	Farnesyl-diphosphate farnesyltransferase.	Uncharacterized protein.	0.506
PV06_06531	PV06_03634	A0A0D2DZD6	A0A0D2C5Y1	Cell division control protein 42, variant.	Uncharacterized protein.	0.489
PV06_06531	PV06_08239	A0A0D2DZD6	A0A0D2BQ21	Cell division control protein 42, variant.	PlsC domain-containing protein.	0.650
PV06_06531	PV06_09148	A0A0D2DZD6	A0A0D2BPA7	Cell division control protein 42, variant.	Uncharacterized protein.	0.650
PV06_06531	PV06_09618	A0A0D2DZD6	A0A0D2BML0	Cell division control protein 42, variant.	Uncharacterized protein.	0.846
PV06_06531	PV06_11685	A0A0D2DZD6	A0A0D2D1F5	Cell division control protein 42, variant.	Uncharacterized protein.	0.484
PV06_06531	PV06_11752	A0A0D2DZD6	A0A0D2A6F5	Cell division control protein 42, variant.	Protein kinase domain-containing protein.	0.862
PV06_08239	PV06_03634	A0A0D2BQ21	A0A0D2C5Y1	PlsC domain-containing protein.	Uncharacterized protein.	0.650
PV06_08239	PV06_06531	A0A0D2BQ21	A0A0D2DZD6	PlsC domain-containing protein.	Cell division control protein 42, variant.	0.650