Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MED11 | PV06_05065 | A0A0D2DU01 | A0A0D2C2Q1 | Mediator of RNA polymerase II transcription subunit 11; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | CS domain-containing protein. | 0.470 |
MED11 | PV06_07339 | A0A0D2DU01 | A0A0D2DAH9 | Mediator of RNA polymerase II transcription subunit 11; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | PKS_ER domain-containing protein. | 0.475 |
MED11 | PV06_09020 | A0A0D2DU01 | A0A0D2BNY5 | Mediator of RNA polymerase II transcription subunit 11; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | Uncharacterized protein. | 0.442 |
PV06_00026 | PV06_07339 | A0A0D2B4Y5 | A0A0D2DAH9 | Uncharacterized protein. | PKS_ER domain-containing protein. | 0.468 |
PV06_00026 | PV06_09020 | A0A0D2B4Y5 | A0A0D2BNY5 | Uncharacterized protein. | Uncharacterized protein. | 0.535 |
PV06_00573 | PV06_07339 | A0A0D2EJ20 | A0A0D2DAH9 | 4-hydroxyphenylpyruvate dioxygenase. | PKS_ER domain-containing protein. | 0.454 |
PV06_00918 | PV06_07339 | A0A0D2B7V0 | A0A0D2DAH9 | VOC domain-containing protein. | PKS_ER domain-containing protein. | 0.443 |
PV06_00918 | PV06_07898 | A0A0D2B7V0 | A0A0D2AL25 | VOC domain-containing protein. | SCP2 domain-containing protein. | 0.591 |
PV06_05065 | MED11 | A0A0D2C2Q1 | A0A0D2DU01 | CS domain-containing protein. | Mediator of RNA polymerase II transcription subunit 11; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.470 |
PV06_05065 | PV06_06051 | A0A0D2C2Q1 | A0A0D2ARL6 | CS domain-containing protein. | Actin-related protein 2/3 complex subunit; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks; Belongs to the WD repeat ARPC1 family. | 0.563 |
PV06_05065 | PV06_07339 | A0A0D2C2Q1 | A0A0D2DAH9 | CS domain-containing protein. | PKS_ER domain-containing protein. | 0.506 |
PV06_05550 | PV06_07339 | A0A0D2APV7 | A0A0D2DAH9 | Deoxyribose-phosphate aldolase. | PKS_ER domain-containing protein. | 0.461 |
PV06_06051 | PV06_05065 | A0A0D2ARL6 | A0A0D2C2Q1 | Actin-related protein 2/3 complex subunit; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks; Belongs to the WD repeat ARPC1 family. | CS domain-containing protein. | 0.563 |
PV06_06051 | PV06_07339 | A0A0D2ARL6 | A0A0D2DAH9 | Actin-related protein 2/3 complex subunit; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks; Belongs to the WD repeat ARPC1 family. | PKS_ER domain-containing protein. | 0.475 |
PV06_07339 | MED11 | A0A0D2DAH9 | A0A0D2DU01 | PKS_ER domain-containing protein. | Mediator of RNA polymerase II transcription subunit 11; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.475 |
PV06_07339 | PV06_00026 | A0A0D2DAH9 | A0A0D2B4Y5 | PKS_ER domain-containing protein. | Uncharacterized protein. | 0.468 |
PV06_07339 | PV06_00573 | A0A0D2DAH9 | A0A0D2EJ20 | PKS_ER domain-containing protein. | 4-hydroxyphenylpyruvate dioxygenase. | 0.454 |
PV06_07339 | PV06_00918 | A0A0D2DAH9 | A0A0D2B7V0 | PKS_ER domain-containing protein. | VOC domain-containing protein. | 0.443 |
PV06_07339 | PV06_05065 | A0A0D2DAH9 | A0A0D2C2Q1 | PKS_ER domain-containing protein. | CS domain-containing protein. | 0.506 |
PV06_07339 | PV06_05550 | A0A0D2DAH9 | A0A0D2APV7 | PKS_ER domain-containing protein. | Deoxyribose-phosphate aldolase. | 0.461 |
page 1 of 2