STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PV06_058481-aminocyclopropane-1-carboxylate deaminase. (353 aa)    
Predicted Functional Partners:
PV06_03702
Aminotran_1_2 domain-containing protein.
     
 0.739
PV06_02842
Uncharacterized protein; Belongs to the LDH/MDH superfamily.
    
 0.691
PV06_09761
L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.
    
 0.691
PV06_01261
Uncharacterized protein.
   
 
  0.681
PV06_01447
Cystathionine beta-lyase.
   
 
  0.681
PV06_10647
Aminotran_1_2 domain-containing protein.
     
 0.678
PV06_06808
S-methyl-5'-thioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates.
    
 0.635
PV06_03434
Xanthine dehydrogenase.
    
 0.601
PV06_03004
Adenine phosphoribosyltransferase.
     
 0.509
PV06_01016
ATP-dependent Clp protease proteolytic subunit.
      
 0.495
Your Current Organism:
Exophiala oligosperma
NCBI taxonomy Id: 215243
Other names: CBS 265.49, CBS 725.88, E. oligosperma, Exophiala oligosperma Calendron ex de Hoog & Tintelnot, Exophiala sp. CBS 725.88
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