STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PV06_11800CCHC-type domain-containing protein. (403 aa)    
Predicted Functional Partners:
PV06_03314
Uncharacterized protein.
   
   0.720
PV06_05178
Uncharacterized protein.
    
 0.715
PV06_10109
60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.
   
   0.683
PV06_01909
26S proteasome regulatory subunit rpn11.
    
  0.674
PV06_05010
Uncharacterized protein.
    
  0.667
PV06_02025
Ribosomal_L2_C domain-containing protein.
   
 
 0.653
PV06_04278
Ubiquitin-40S ribosomal protein S27a.
    
  0.651
PV06_02579
BZIP domain-containing protein.
    
  0.651
PV06_06448
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
    
  0.642
PV06_00394
60S ribosomal protein L2-B.
   
 
 0.639
Your Current Organism:
Exophiala oligosperma
NCBI taxonomy Id: 215243
Other names: CBS 265.49, CBS 725.88, E. oligosperma, Exophiala oligosperma Calendron ex de Hoog & Tintelnot, Exophiala sp. CBS 725.88
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