PV06_04936 protein (Exophiala oligosperma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PV06_04936

Uncharacterized protein. (268 aa)

Predicted Functional Partners:

PV06_02069

0.996

PV06_02995

0.996

PV06_01935

0.996

PV06_00801

0.988

PV06_02425

0.984

PV06_05786

0.982

PV06_04278

0.980

PV06_09188

0.980

PV06_01292

0.980

PV06_09674

0.980

Your Current Organism:

Exophiala oligosperma

NCBI taxonomy Id: 215243
Other names: CBS 265.49, CBS 725.88, E. oligosperma, Exophiala oligosperma Calendron ex de Hoog & Tintelnot, Exophiala sp. CBS 725.88

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV06_00801	PV06_01292	A0A0D2CE70	A0A0D2CFN9	TPR_REGION domain-containing protein.	Polyubiquitin.	0.727
PV06_00801	PV06_01935	A0A0D2CE70	A0A0D2EEA0	TPR_REGION domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.999
PV06_00801	PV06_02069	A0A0D2CE70	A0A0D2C996	TPR_REGION domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.999
PV06_00801	PV06_02425	A0A0D2CE70	A0A0D2DUG2	TPR_REGION domain-containing protein.	Pex14_N domain-containing protein.	0.992
PV06_00801	PV06_02995	A0A0D2CE70	A0A0D2E9F2	TPR_REGION domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.999
PV06_00801	PV06_04278	A0A0D2CE70	A0A0D2ATG3	TPR_REGION domain-containing protein.	Ubiquitin-40S ribosomal protein S27a.	0.719
PV06_00801	PV06_04936	A0A0D2CE70	A0A0D2DN37	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.988
PV06_00801	PV06_05786	A0A0D2CE70	A0A0D2BXH4	TPR_REGION domain-containing protein.	SH3 domain-containing protein.	0.986
PV06_00801	PV06_09188	A0A0D2CE70	A0A0D2BPE3	TPR_REGION domain-containing protein.	Pex2_Pex12 domain-containing protein.	0.984
PV06_00801	PV06_09674	A0A0D2CE70	A0A0D2D8D7	TPR_REGION domain-containing protein.	RING-type domain-containing protein.	0.931
PV06_01292	PV06_00801	A0A0D2CFN9	A0A0D2CE70	Polyubiquitin.	TPR_REGION domain-containing protein.	0.727
PV06_01292	PV06_01935	A0A0D2CFN9	A0A0D2EEA0	Polyubiquitin.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.979
PV06_01292	PV06_02069	A0A0D2CFN9	A0A0D2C996	Polyubiquitin.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.979
PV06_01292	PV06_02425	A0A0D2CFN9	A0A0D2DUG2	Polyubiquitin.	Pex14_N domain-containing protein.	0.665
PV06_01292	PV06_02995	A0A0D2CFN9	A0A0D2E9F2	Polyubiquitin.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.979
PV06_01292	PV06_04278	A0A0D2CFN9	A0A0D2ATG3	Polyubiquitin.	Ubiquitin-40S ribosomal protein S27a.	0.952
PV06_01292	PV06_04936	A0A0D2CFN9	A0A0D2DN37	Polyubiquitin.	Uncharacterized protein.	0.980
PV06_01292	PV06_09188	A0A0D2CFN9	A0A0D2BPE3	Polyubiquitin.	Pex2_Pex12 domain-containing protein.	0.650
PV06_01292	PV06_09674	A0A0D2CFN9	A0A0D2D8D7	Polyubiquitin.	RING-type domain-containing protein.	0.652
PV06_01935	PV06_00801	A0A0D2EEA0	A0A0D2CE70	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	TPR_REGION domain-containing protein.	0.999