PV06_10625 protein (Exophiala oligosperma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PV06_10625

ANK_REP_REGION domain-containing protein. (363 aa)

Predicted Functional Partners:

PV06_08536

0.697

PV06_09656

0.659

PV06_06666

0.659

PV06_03227

0.659

PV06_02811

0.623

PV06_08898

0.599

PV06_06730

0.593

PV06_04278

0.572

PV06_02579

0.572

PV06_11370

0.568

Your Current Organism:

Exophiala oligosperma

NCBI taxonomy Id: 215243
Other names: CBS 265.49, CBS 725.88, E. oligosperma, Exophiala oligosperma Calendron ex de Hoog & Tintelnot, Exophiala sp. CBS 725.88

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV06_02579	PV06_06730	A0A0D2DWI2	A0A0D2BUM3	BZIP domain-containing protein.	Uncharacterized protein.	0.717
PV06_02579	PV06_08898	A0A0D2DWI2	A0A0D2BNL4	BZIP domain-containing protein.	UBA domain-containing protein.	0.630
PV06_02579	PV06_10625	A0A0D2DWI2	A0A0D2DNC2	BZIP domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.572
PV06_02579	PV06_11370	A0A0D2DWI2	A0A0D2BFT9	BZIP domain-containing protein.	Uncharacterized protein.	0.980
PV06_02811	PV06_06730	A0A0D2DX43	A0A0D2BUM3	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein.	0.813
PV06_02811	PV06_10625	A0A0D2DX43	A0A0D2DNC2	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	ANK_REP_REGION domain-containing protein.	0.623
PV06_03227	PV06_06666	A0A0D2E9X2	A0A0D2AMB1	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	TIGR01456 family HAD hydrolase.	0.849
PV06_03227	PV06_09656	A0A0D2E9X2	A0A0D2AEU5	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	TIGR01456 family HAD hydrolase.	0.854
PV06_03227	PV06_10625	A0A0D2E9X2	A0A0D2DNC2	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	ANK_REP_REGION domain-containing protein.	0.659
PV06_04278	PV06_06730	A0A0D2ATG3	A0A0D2BUM3	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.717
PV06_04278	PV06_08898	A0A0D2ATG3	A0A0D2BNL4	Ubiquitin-40S ribosomal protein S27a.	UBA domain-containing protein.	0.630
PV06_04278	PV06_10625	A0A0D2ATG3	A0A0D2DNC2	Ubiquitin-40S ribosomal protein S27a.	ANK_REP_REGION domain-containing protein.	0.572
PV06_04278	PV06_11370	A0A0D2ATG3	A0A0D2BFT9	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.980
PV06_06666	PV06_03227	A0A0D2AMB1	A0A0D2E9X2	TIGR01456 family HAD hydrolase.	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.849
PV06_06666	PV06_09656	A0A0D2AMB1	A0A0D2AEU5	TIGR01456 family HAD hydrolase.	TIGR01456 family HAD hydrolase.	0.847
PV06_06666	PV06_10625	A0A0D2AMB1	A0A0D2DNC2	TIGR01456 family HAD hydrolase.	ANK_REP_REGION domain-containing protein.	0.659
PV06_06730	PV06_02579	A0A0D2BUM3	A0A0D2DWI2	Uncharacterized protein.	BZIP domain-containing protein.	0.717
PV06_06730	PV06_02811	A0A0D2BUM3	A0A0D2DX43	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.813
PV06_06730	PV06_04278	A0A0D2BUM3	A0A0D2ATG3	Uncharacterized protein.	Ubiquitin-40S ribosomal protein S27a.	0.717
PV06_06730	PV06_10625	A0A0D2BUM3	A0A0D2DNC2	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.593