PV06_06502 protein (Exophiala oligosperma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PV06_06502

CFEM domain-containing protein. (194 aa)

Predicted Functional Partners:

PV06_00849

0.807

PV06_02687

0.807

PV06_07123

0.498

PV06_02088

0.462

PV06_00399

0.442

PV06_07472

0.435

PV06_02742

0.424

PV06_11752

0.423

PV06_01909

0.419

PV06_10374

0.418

Your Current Organism:

Exophiala oligosperma

NCBI taxonomy Id: 215243
Other names: CBS 265.49, CBS 725.88, E. oligosperma, Exophiala oligosperma Calendron ex de Hoog & Tintelnot, Exophiala sp. CBS 725.88

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV06_00399	PV06_06502	A0A0D2EIG2	A0A0D2DZ93	TAP-C domain-containing protein.	CFEM domain-containing protein.	0.442
PV06_00399	PV06_07472	A0A0D2EIG2	A0A0D2DXL1	TAP-C domain-containing protein.	Importin subunit alpha; Belongs to the importin alpha family.	0.593
PV06_00849	PV06_02088	A0A0D2CEC0	A0A0D2B2K3	Uncharacterized protein.	GRIP domain-containing protein.	0.621
PV06_00849	PV06_02742	A0A0D2CEC0	A0A0D2DVL6	Uncharacterized protein.	WH1 domain-containing protein.	0.721
PV06_00849	PV06_06502	A0A0D2CEC0	A0A0D2DZ93	Uncharacterized protein.	CFEM domain-containing protein.	0.807
PV06_00849	PV06_11752	A0A0D2CEC0	A0A0D2A6F5	Uncharacterized protein.	Protein kinase domain-containing protein.	0.915
PV06_01909	PV06_06502	A0A0D2B226	A0A0D2DZ93	26S proteasome regulatory subunit rpn11.	CFEM domain-containing protein.	0.419
PV06_01909	PV06_07472	A0A0D2B226	A0A0D2DXL1	26S proteasome regulatory subunit rpn11.	Importin subunit alpha; Belongs to the importin alpha family.	0.521
PV06_02088	PV06_00849	A0A0D2B2K3	A0A0D2CEC0	GRIP domain-containing protein.	Uncharacterized protein.	0.621
PV06_02088	PV06_02687	A0A0D2B2K3	A0A0D2DWS6	GRIP domain-containing protein.	WAPL domain-containing protein.	0.621
PV06_02088	PV06_02742	A0A0D2B2K3	A0A0D2DVL6	GRIP domain-containing protein.	WH1 domain-containing protein.	0.532
PV06_02088	PV06_06502	A0A0D2B2K3	A0A0D2DZ93	GRIP domain-containing protein.	CFEM domain-containing protein.	0.462
PV06_02088	PV06_07472	A0A0D2B2K3	A0A0D2DXL1	GRIP domain-containing protein.	Importin subunit alpha; Belongs to the importin alpha family.	0.494
PV06_02088	PV06_11752	A0A0D2B2K3	A0A0D2A6F5	GRIP domain-containing protein.	Protein kinase domain-containing protein.	0.747
PV06_02687	PV06_02088	A0A0D2DWS6	A0A0D2B2K3	WAPL domain-containing protein.	GRIP domain-containing protein.	0.621
PV06_02687	PV06_02742	A0A0D2DWS6	A0A0D2DVL6	WAPL domain-containing protein.	WH1 domain-containing protein.	0.721
PV06_02687	PV06_06502	A0A0D2DWS6	A0A0D2DZ93	WAPL domain-containing protein.	CFEM domain-containing protein.	0.807
PV06_02687	PV06_11752	A0A0D2DWS6	A0A0D2A6F5	WAPL domain-containing protein.	Protein kinase domain-containing protein.	0.915
PV06_02742	PV06_00849	A0A0D2DVL6	A0A0D2CEC0	WH1 domain-containing protein.	Uncharacterized protein.	0.721
PV06_02742	PV06_02088	A0A0D2DVL6	A0A0D2B2K3	WH1 domain-containing protein.	GRIP domain-containing protein.	0.532