STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PV06_00958RING-type domain-containing protein. (296 aa)    
Predicted Functional Partners:
PV06_01243
P/Homo B domain-containing protein; Belongs to the peptidase S8 family.
    
  0.781
PV06_01292
Polyubiquitin.
    
  0.748
PV06_06358
Uncharacterized protein.
    
  0.748
PV06_04278
Ubiquitin-40S ribosomal protein S27a.
    
  0.717
PV06_02579
BZIP domain-containing protein.
    
  0.717
PV06_07042
Uncharacterized protein.
    
 0.694
PV06_07105
Uncharacterized protein.
    
 0.694
PV06_03230
Ubiquitin-60S ribosomal protein L40.
    
 0.694
PV06_02100
Uncharacterized protein.
    
 0.694
PV06_06848
HECT domain-containing protein.
     
 0.671
Your Current Organism:
Exophiala oligosperma
NCBI taxonomy Id: 215243
Other names: CBS 265.49, CBS 725.88, E. oligosperma, Exophiala oligosperma Calendron ex de Hoog & Tintelnot, Exophiala sp. CBS 725.88
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.