STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A316YM14Uncharacterized protein. (318 aa)    
Predicted Functional Partners:
A0A316YII7
WD40 repeat-like protein.
   
 0.999
A0A316YPW1
Uncharacterized protein.
   
 0.999
A0A316YRY7
Uncharacterized protein.
    
 0.999
A0A316YD16
Putative ATP-dependent RNA helicase.
   
 0.953
A0A316YL65
Uncharacterized protein.
   
 0.906
A0A316YU00
G-patch domain-containing protein.
   
 0.906
A0A316YRC5
RRM domain-containing protein.
   
 0.826
A0A316YS42
RNA-binding domain-containing protein.
   
 0.826
SUS1
Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...]
   
 
 0.806
A0A316YG91
Uncharacterized protein.
     
 0.777
Your Current Organism:
Acaromyces ingoldii
NCBI taxonomy Id: 215250
Other names: A. ingoldii, AS001, CBS 110050
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