STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A316YPG1Ribonuclease H-like protein. (220 aa)    
Predicted Functional Partners:
A0A316YVZ2
C3H1-type domain-containing protein.
   
 0.965
A0A316YVQ1
Exonuclease domain-containing protein.
   
 0.762
A0A316YLK1
Phosphoglucomutase, first 3 domain-containing protein; Belongs to the phosphohexose mutase family.
 
    
 0.733
A0A316YNY3
Uncharacterized protein.
   
 0.623
FA10DRAFT_2408
Uncharacterized protein.
   
 0.623
PAN2
PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...]
   
 0.613
A0A316YYN0
Putative MET22-protein ser/thr phosphatase.
      
 0.536
A0A316YNM2
EF_TS domain-containing protein.
      
 0.468
A0A316YHS7
Uncharacterized protein.
   
  
 0.454
A0A316YLD5
DNA-directed RNA polymerases I.
      
 0.442
Your Current Organism:
Acaromyces ingoldii
NCBI taxonomy Id: 215250
Other names: A. ingoldii, AS001, CBS 110050
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