A0A316YRM4 protein (Acaromyces ingoldii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A316YRM4

Uncharacterized protein. (204 aa)

Predicted Functional Partners:

A0A316YQ18

0.996

A0A316YPM2

0.974

A0A316YUF1

0.960

A0A316YQS1

0.946

A0A316YK72

0.931

A0A316YX06

0.910

A0A316YER4

0.896

A0A316YLY5

0.879

A0A316YML3

0.868

A0A316YKR7

0.862

Your Current Organism:

Acaromyces ingoldii

NCBI taxonomy Id: 215250
Other names: A. ingoldii, AS001, CBS 110050

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A316YER4	A0A316YK72	Nop14-like protein.	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.	0.997
A0A316YER4	A0A316YKR7	Nop14-like protein.	Nep1-domain-containing protein.	0.999
A0A316YER4	A0A316YLY5	Nop14-like protein.	Sas10 domain-containing protein.	0.999
A0A316YER4	A0A316YML3	Nop14-like protein.	WD40 repeat-like protein.	0.999
A0A316YER4	A0A316YPM2	Nop14-like protein.	NUC189-domain-containing protein.	0.996
A0A316YER4	A0A316YQ18	Nop14-like protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
A0A316YER4	A0A316YQS1	Nop14-like protein.	Uncharacterized protein.	0.999
A0A316YER4	A0A316YRM4	Nop14-like protein.	Uncharacterized protein.	0.896
A0A316YER4	A0A316YUF1	Nop14-like protein.	Small-subunit processome.	0.999
A0A316YER4	A0A316YX06	Nop14-like protein.	Putative IMP3-component of the U3 small nucleolar ribonucleo protein.	0.975
A0A316YK72	A0A316YER4	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.	Nop14-like protein.	0.997
A0A316YK72	A0A316YKR7	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.	Nep1-domain-containing protein.	0.981
A0A316YK72	A0A316YLY5	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.	Sas10 domain-containing protein.	0.999
A0A316YK72	A0A316YML3	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.	WD40 repeat-like protein.	0.994
A0A316YK72	A0A316YPM2	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.	NUC189-domain-containing protein.	0.887
A0A316YK72	A0A316YQ18	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.998
A0A316YK72	A0A316YQS1	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.989
A0A316YK72	A0A316YRM4	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.931
A0A316YK72	A0A316YUF1	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.	Small-subunit processome.	0.966
A0A316YK72	A0A316YX06	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.	Putative IMP3-component of the U3 small nucleolar ribonucleo protein.	0.815