STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A316YRP0P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family. (724 aa)    
Predicted Functional Partners:
A0A316YL74
Putative ribosomal elongation factor EF-2.
   
 0.999
A0A316YTS4
PRP1_N domain-containing protein.
   
 0.999
A0A316YYI8
Putative PRP8-U5 snRNP protein, pre-mRNA splicing factor.
   
 0.999
A0A316Z0A2
Putative U5 snRNP-specific 40 kd protein.
    
 0.998
A0A316YFX6
Putative ATP dependent RNA helicase.
   
 0.985
A0A316YP88
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.974
A0A316YWZ9
Small nuclear ribonucleoprotein Sm D2.
    
 0.973
A0A316YRI5
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
 
  
 0.972
A0A316YRB7
Uncharacterized protein.
   
 0.971
A0A316YPD8
Small nuclear ribonucleoprotein Sm D3.
   
 0.967
Your Current Organism:
Acaromyces ingoldii
NCBI taxonomy Id: 215250
Other names: A. ingoldii, AS001, CBS 110050
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.