A0A316YST5 protein (Acaromyces ingoldii) - STRING interaction network

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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co-expression

protein homology

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Score

A0A316YST5

Zn(2)-C6 fungal-type domain-containing protein. (655 aa)

Predicted Functional Partners:

A0A316YJQ8

0.825

A0A316YSL5

0.825

A0A316YJ28

0.737

NOP7

0.719

A0A316YMT2

0.712

ERB1

0.672

A0A316YU99

0.650

A0A316YSB0

0.638

A0A316YQG1

0.629

A0A316YKR9

0.622

Your Current Organism:

Acaromyces ingoldii

NCBI taxonomy Id: 215250
Other names: A. ingoldii, AS001, CBS 110050

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A316YJ28	A0A316YKR9	A0A316YJ28	A0A316YKR9	WD40 repeat-like protein.	Las1-domain-containing protein.	0.898
A0A316YJ28	A0A316YMT2	A0A316YJ28	A0A316YMT2	WD40 repeat-like protein.	Ipi1_N domain-containing protein.	0.999
A0A316YJ28	A0A316YQG1	A0A316YJ28	A0A316YQG1	WD40 repeat-like protein.	CLP1_P domain-containing protein.	0.970
A0A316YJ28	A0A316YST5	A0A316YJ28	A0A316YST5	WD40 repeat-like protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.737
A0A316YJ28	ERB1	A0A316YJ28	A0A316YLZ7	WD40 repeat-like protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.974
A0A316YJ28	NOP7	A0A316YJ28	A0A316YLI3	WD40 repeat-like protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.941
A0A316YJQ8	A0A316YSB0	A0A316YJQ8	A0A316YSB0	DUF4203 domain-containing protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.810
A0A316YJQ8	A0A316YSL5	A0A316YJQ8	A0A316YSL5	DUF4203 domain-containing protein.	PXA domain-containing protein.	0.500
A0A316YJQ8	A0A316YST5	A0A316YJQ8	A0A316YST5	DUF4203 domain-containing protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.825
A0A316YJQ8	A0A316YU99	A0A316YJQ8	A0A316YU99	DUF4203 domain-containing protein.	Uncharacterized protein.	0.679
A0A316YKR9	A0A316YJ28	A0A316YKR9	A0A316YJ28	Las1-domain-containing protein.	WD40 repeat-like protein.	0.898
A0A316YKR9	A0A316YMT2	A0A316YKR9	A0A316YMT2	Las1-domain-containing protein.	Ipi1_N domain-containing protein.	0.846
A0A316YKR9	A0A316YQG1	A0A316YKR9	A0A316YQG1	Las1-domain-containing protein.	CLP1_P domain-containing protein.	0.999
A0A316YKR9	A0A316YST5	A0A316YKR9	A0A316YST5	Las1-domain-containing protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.622
A0A316YKR9	ERB1	A0A316YKR9	A0A316YLZ7	Las1-domain-containing protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.773
A0A316YKR9	NOP7	A0A316YKR9	A0A316YLI3	Las1-domain-containing protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.732
A0A316YMT2	A0A316YJ28	A0A316YMT2	A0A316YJ28	Ipi1_N domain-containing protein.	WD40 repeat-like protein.	0.999
A0A316YMT2	A0A316YKR9	A0A316YMT2	A0A316YKR9	Ipi1_N domain-containing protein.	Las1-domain-containing protein.	0.846
A0A316YMT2	A0A316YQG1	A0A316YMT2	A0A316YQG1	Ipi1_N domain-containing protein.	CLP1_P domain-containing protein.	0.908
A0A316YMT2	A0A316YST5	A0A316YMT2	A0A316YST5	Ipi1_N domain-containing protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.712

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Network Stats

number of nodes:

11

number of edges:

28

average node degree:

5.09

avg. local clustering coefficient:

0.86

expected number of edges:

51

PPI enrichment p-value:

1

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0019698

D-galacturonate catabolic process

3 of 3

2.45

1.62

0.00099

GO:0016052

Carbohydrate catabolic process

4 of 42

1.43

1.07

0.0032

GO:0042840

D-glucuronate catabolic process

2 of 3

2.28

1.0

0.0144

GO:0046395

Carboxylic acid catabolic process

4 of 57

1.3

0.88

0.0075

GO:0005975

Carbohydrate metabolic process

6 of 216

0.9

0.63

0.0075

Reference Publications (PubMed)

publication

(year) title

count in network

strength

signal

false discovery rate

PMID:20485560

(2010) Genome sequence of the plant growth promoting endophytic bacterium Enterobacter sp. 638.

6 of 26

1.82

2.58

9.69e-07

PMID:31719848

(2019) Genomic characterization of a pectinolytic isolate of Serratia oryzae isolated from lake water.

4 of 7

2.21

2.24

4.25e-05

PMID:31133029

(2019) Carbohydrate metabolic systems present on genomic islands are lost and gained in Vibrio parahaemolyticus.

3 of 8

2.03

1.18

0.0055

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:3275

Mixed, incl. Uronic acid metabolic process, and Mannitol dehydrogenase

7 of 10

2.3

5.25

7.57e-12

CL:3277

Uronic acid metabolic process, and Mannitol dehydrogenase

3 of 5

2.23

1.92

0.00021

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00040

Pentose and glucuronate interconversions

5 of 20

1.85

2.6

1.14e-06

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