STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A316Z0T1Uncharacterized protein. (688 aa)    
Predicted Functional Partners:
A0A316YW66
Uncharacterized protein.
    
 0.682
A0A316YXE6
DNA polymerase.
   
 0.660
A0A316YQH7
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.657
A0A316YW33
Uncharacterized protein.
    
 0.652
A0A316YP88
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
  0.651
A0A316YWZ9
Small nuclear ribonucleoprotein Sm D2.
    
 0.648
A0A316Z1K9
Putative small nuclear ribonucleo protein F.
    
  0.646
A0A316YFR0
DNA repair protein.
    
 0.621
A0A316YJU4
Putative chromatin assembly factor 1 subunit C.
    
  0.615
A0A316YPD8
Small nuclear ribonucleoprotein Sm D3.
    
  0.608
Your Current Organism:
Acaromyces ingoldii
NCBI taxonomy Id: 215250
Other names: A. ingoldii, AS001, CBS 110050
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