STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tyw5TRNA wybutosine-synthesizing protein 5. (358 aa)    
Predicted Functional Partners:
lcmt2
TRNA wybutosine-synthesizing protein 4.
 
    
 0.934
trmt12
TRNA wybutosine-synthesizing protein 2 homolog.
 
    
 0.762
LOC104934297
S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase.
      
 0.624
tyw3
TRNA wybutosine-synthesizing protein 3 homolog.
      
 0.619
riox2
Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA.
      
 0.589
JMJD8
Jumonji domain containing 8.
      
 0.582
trmt5
TRNA (guanine(37)-N1)-methyltransferase.
   
  
 0.535
alkbh1
Alkylated DNA repair protein alkB homolog 1.
      
 0.527
Npas1
Neuronal PAS domain-containing protein 1/3.
    
 0.524
ENSLCRP00005004613
Neuronal PAS domain protein 1.
    
 0.524
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.