STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
micall1MICAL-like protein 1 isoform X1. (932 aa)    
Predicted Functional Partners:
LOC104939945
Calcium/calmodulin-dependent serine protein kinase.
   
  0.563
CASK
Calcium/calmodulin-dependent serine protein kinase.
   
  0.563
capzb
Capping actin protein of muscle Z-line subunit beta.
    
 0.517
itsn2
Intersectin 2.
   
 
 0.482
LOC104920145
Intersectin-2.
   
 
 0.482
myoz1
Myozenin-1.
   
 
 0.421
rab12
Ras-related protein Rab-12.
    
 0.420
LOC104918278
Tropomyosin alpha-1 chain isoform X1.
   
 0.417
tpm4
Tropomyosin alpha-4 chain isoform X4.
   
 0.417
LOC104933070
Tropomyosin alpha-3 chain.
   
 0.417
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.