STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps53Vacuolar protein sorting-associated protein 53 homolog. (847 aa)    
Predicted Functional Partners:
vps51
Vacuolar protein sorting-associated protein 51 homolog.
    
 0.999
vps54
Vacuolar protein sorting-associated protein 54 isoform X2.
   
 0.997
vps50
Syndetin.
    
 
 0.983
vps52
Vacuolar protein sorting-associated protein 52 homolog isoform X1.
   
 0.974
LOC113745643
Vacuolar protein sorting-associated protein 52 homolog.
   
 0.974
cog8
Conserved oligomeric Golgi complex subunit 8.
   
 
 0.892
cog3
Conserved oligomeric Golgi complex subunit 3.
   
 
 0.888
cog6
Conserved oligomeric Golgi complex subunit 6.
     
 0.885
eipr1
EARP complex and GARP complex interacting protein 1.
    
 
 0.884
stx16
Syntaxin-16 isoform X1.
    
 0.884
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.