STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNAI2Zinc finger protein SNAI2. (278 aa)    
Predicted Functional Partners:
kdm1a
[histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase.
    
 0.837
kpnb1
Karyopherin subunit beta 1.
    
   0.737
tp53
Cellular tumor antigen p53.
    
 0.669
LOC104934047
F-box/WD repeat-containing protein 11.
    
 
 0.657
dnmt1
DNA (cytosine-5)-methyltransferase 1.
    
 
 0.634
nrg4
Pro-neuregulin-4, membrane-bound isoform.
      
 0.586
hmg20a
High mobility group protein 20A isoform X1.
    
 
 0.584
foxd3
Forkhead box protein D3.
   
  
 0.575
LOC104928105
Catenin beta 1.
      
 0.575
sox10
Transcription factor SOX7/8/10/18 (SOX group E/F).
   
 
 0.574
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.