STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kat2aHistone acetyltransferase KAT2A. (815 aa)    
Predicted Functional Partners:
mysm1
Histone H2A deubiquitinase MYSM1.
   
 0.990
LOC104932854
Transcription initiation factor TFIID subunit 9.
   
 0.974
tada3
Transcriptional adapter 3.
    
 0.973
trrap
Transformation/transcription domain-associated protein.
    
 0.972
taf10
Transcription initiation factor TFIID subunit 10.
    
 0.969
rbpj
Recombining binding protein suppressor of hairless.
    
 0.962
tada2a
Transcriptional adaptor 2A.
   
 0.959
LOC104936685
Recombining binding protein suppressor of hairless-like protein isoform X1.
    
 0.958
sgf29
SAGA complex associated factor 29.
    
 0.956
supt3h
Transcription initiation protein SPT3 homolog.
    
 0.956
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.