STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104920865Ubiquitin carboxyl-terminal hydrolase 2 isoform X1. (606 aa)    
Predicted Functional Partners:
ubb
Polyubiquitin-B isoform X1.
   
 0.876
rnf41
E3 ubiquitin-protein ligase NRDP1.
    
 0.824
rps27a
Ubiquitin-small subunit ribosomal protein S27Ae.
    
 0.769
hgs
Hepatocyte growth factor-regulated tyrosine kinase substrate isoform X1.
   
 0.752
stam
Signal transducing adapter molecule 1.
    
 0.732
stam2
Signal transducing adapter molecule 2 isoform X1.
    
 0.732
ripk1
Receptor-interacting serine/threonine-protein kinase 1 isoform X1.
    
 0.683
LOC104935852
Ubiquitin-large subunit ribosomal protein L40e.
   
 0.664
LOC104920976
Ubiquitin-large subunit ribosomal protein L40e.
   
 0.664
chmp3
Charged multivesicular body protein 3.
    
 
 0.582
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.